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Series GSE167539 Query DataSets for GSE167539
Status Public on Oct 11, 2021
Title Mammalian SWI/SNF chromatin remodeler is essential for reductional meiosis in males
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary CUT&RUN to map ARID2 and BRG1 genomic associations in late prophase-I and metaphase-I spermatocytes
 
Overall design CUT&RUN was performed on prophase-I and metaphase-I spermatocyte enriched populations isolated from P28 and P28.5 testes displaying synchronized spermatogenesis
 
Contributor(s) Menon D, Magnuson T
Citation(s) 34772938
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 GM101974 Albino Deletion Complex and Early Mouse Development UNIVERSITY OF NORTH CAROLINA AT CHAPEL HILL TERRY R MAGNUSON
Submission date Feb 25, 2021
Last update date Nov 13, 2021
Contact name Terry Magnuson
E-mail(s) trm4@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Genetics
Lab Terry Magnuson
Street address 120 Mason Farm Road, Genetics Medicine Bldg.,
City Chapel hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM5106940 ARID2_CnR_P28_synch_d1
GSM5106941 ARID2_CnR_P28_synch_d2
GSM5106942 BRG1G7_CnR_P28_synch
Relations
BioProject PRJNA704919
SRA SRP308211

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE167539_ARID2Cl1_P28-5_geneTSS.bed.gz 81.5 Kb (ftp)(http) BED
GSE167539_ARID2Cl1_P28_geneTSS.bed.gz 116.7 Kb (ftp)(http) BED
GSE167539_P28-5ARID2-noIgG_Avg.bw 746.0 Mb (ftp)(http) BW
GSE167539_P28-5ARID2pks.bb 58.9 Kb (ftp)(http) BB
GSE167539_P28-5BRG1-noIgG_Avg.bw 633.8 Mb (ftp)(http) BW
GSE167539_P28ARID2-noIgG_Avg.bw 678.5 Mb (ftp)(http) BW
GSE167539_P28ARID2pks.bb 7.2 Mb (ftp)(http) BB
GSE167539_P28BRG1-noIgG_Avg.bw 590.3 Mb (ftp)(http) BW
GSE167539_RAW.tar 3.1 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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