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Series GSE166948 Query DataSets for GSE166948
Status Public on Feb 18, 2021
Title Interleukin-17 governs hypoxic adaptation of injured epithelium [spatial transcriptomics]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To define the gene signature and spatial architecture of the skin after injury, we performed spatial transcriptomics from mouse unwounded and wounded skin.
Overall design Wild type (unwounded, wounded) and GFP-KI (wounded) skin were fresh frozen and sectioned at 10um thickness onto spatial transcriptomics (ST) slides for mRNA capture, followed by library preparation and sequencing. The GFP-KI genotype disrupts the Rorc gene.
Contributor(s) Konieczny P, Yue X, Sidhu I, Naik S
Citation(s) 35709248
Submission date Feb 17, 2021
Last update date Jan 05, 2023
Contact name Shruti Naik
Organization name NYU Langone Health
Department Pathology
Lab Naik Lab
Street address 435 East 30th Street
City New York
State/province NY
ZIP/Postal code 10016
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM5089667 WT UNWO I - ST
GSM5089668 WT WO I - ST
GSM5089669 WT WO II - ST
This SubSeries is part of SuperSeries:
GSE166950 Interleukin-17 governs hypoxic adaptation of injured epithelium
BioProject PRJNA702458
SRA SRP306848

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE166948_RAW.tar 69.9 Mb (http)(custom) TAR (of H5, TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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