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Series GSE166407 Query DataSets for GSE166407
Status Public on Feb 08, 2024
Title CDK12 maintains phosphorylation of RNA Polymerase II during epidermal differentiation
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary CDK12 plays an important role in regulating epidermal differntaition through maintaining the phosphorylation of RNA polymerase II levels in differentiation associated genes.
 
Overall design CDK12 knockdown RNA-Seq in calcium induced differentiated primary keratinocytes. CDK12 ChIP-Seq with CDK12 and RNA Pol II antibodies in calcium induced differentiated primary keratinocytes.
 
Contributor(s) Li J, Sen G
Citation(s) 35325240
Submission date Feb 09, 2021
Last update date May 09, 2024
Contact name Jingting Li
E-mail(s) lijt66@mail.sysu.edu.cn
Organization name The First Affiliated Hospital, Sun Yat-sen University
Department Institue of Precision Medicine
Street address No 1, Zhongshan 2 Road, 12th Floor
City Guangzhou
ZIP/Postal code 510080
Country China
 
Platforms (2)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM5070724 CTLi.Ser2CHIP_replicate1
GSM5070725 CTLi.Ser2CHIP_replicate2
GSM5070726 CDK12i.Ser2CHIP_replicate1
Relations
BioProject PRJNA700840
SRA SRP305468

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166407_CDK12.CHIP1.bed.gz 664.5 Kb (ftp)(http) BED
GSE166407_CDK12.CHIP2.bed.gz 557.9 Kb (ftp)(http) BED
GSE166407_CDK12i.Pol2CHIPseq.bed.gz 129.8 Kb (ftp)(http) BED
GSE166407_CDK12i.Ser2CHIPseq.bed.gz 85.2 Kb (ftp)(http) BED
GSE166407_CDK12i.counts.txt.gz 257.4 Kb (ftp)(http) TXT
GSE166407_CTLi.Pol2CHIPseq.bed.gz 190.2 Kb (ftp)(http) BED
GSE166407_CTLi.Ser2CHIPseq.bed.gz 125.6 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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