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Series GSE166381 Query DataSets for GSE166381
Status Public on Jun 13, 2022
Title Single and Multiplex GAM datasets from mouse ES cells
Organism Mus musculus
Experiment type Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series

Processed data files included at the foot of this record:
gam_contact_matrices_40kb.tar.gz - "GAM normalised linkage (Dprime) matrices at 40kb resolution."
slice_interaction_matrices_40kb.tar.gz - "SLICE prominent interaction matrices (thresholded at p<=0.05) at 40kb resolution."
 
Citation(s) 37336949
Submission date Feb 08, 2021
Last update date Sep 12, 2023
Contact name Robert A Beagrie
E-mail(s) robert.beagrie@ndcls.ox.ac.uk
Organization name MRC Weatherall Institute of Molecular Medicine
Department Molecular Haematology Unit
Street address Headley Way
City Oxford
ZIP/Postal code OX39DS
Country United Kingdom
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (537)
GSM5069714 1 np: (f13a6)
GSM5069715 1 np: (f13d5)
GSM5069716 1 np: (f13e1)
This SuperSeries is composed of the following SubSeries:
GSE166377 Single GAM datasets collected with one nuclear profile each (samples failing QC)
GSE166378 Single (1 NP) GAM datasets collected from mouse ES cells
GSE166379 Multiplex GAM datasets collected with an average of three nuclear profiles each (samples failing QC)
Relations
BioProject PRJNA700649

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166381_gam_contact_matrices_40kb.tar.gz 728.0 Mb (ftp)(http) TAR
GSE166381_slice_interaction_matrices_40kb.tar.gz 63.5 Mb (ftp)(http) TAR
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