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Series GSE166154 Query DataSets for GSE166154
Status Public on Jan 04, 2023
Title Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary In this study, GC-specific DNA methylation profiling was investigated in nine fresh frozen tissues which included non-tumor, intestinal metaplasia, and gastric tumor using whole genome bisulfite sequencing to deeply understanding epigenome change during gastric carcinogenesis
 
Overall design Examination of five GM, nine IM and GT tissues
 
Contributor(s) Kim YS
Citation(s) 36551669
Submission date Feb 04, 2021
Last update date Jan 05, 2023
Contact name Byoung-Ha Yoon
E-mail(s) cogate@kribb.re.kr
Organization name KRIBB
Street address Gwahak-ro, Yuseong-gu, Daejeon 34141, Korea
City Daejeon
ZIP/Postal code 1
Country South Korea
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (9)
GSM5064723 Adenoma_06_AD
GSM5064724 Gastric mucosa_06_GM
GSM5064725 Intestinal metaplasia_06_IM
This SubSeries is part of SuperSeries:
GSE165023 Sstr2 knockout mice
Relations
BioProject PRJNA699476
SRA SRP304712

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166154_RAW.tar 1.7 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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