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Series GSE164141 Query DataSets for GSE164141
Status Public on Feb 03, 2021
Title MUC1-C integrates activation of the IFN-γ pathway with suppression of the tumor immune microenvironment in triple-negative breast cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Immune checkpoint inhibitors (ICIs) have had a profound impact on the treatment of many tumors; however, their effectiveness against triple-negative breast cancers (TNBCs) has been limited. One factor limiting responsiveness of TNBCs to ICIs is a lack of functional tumor i-infiltrating lymphocytes (TILs) in ‘“non-inflamed’” or ‘“cold’” tumor immune microenvironments (TIMEs), albeitalthough by unknown mechanisms. Targeting MUC1-C in a mouse transgenic TNBC tumor model increases cytotoxic tumor -infiltrating CD8 + T cells (CTLs), supporting a role for MUC1-C in immune evasion. The basis for these findings and whether they extend to human TNBCs are not known.
 
Overall design Human TNBC cells (BT-549) silenced for MUC1-C using doxycycline inducible shRNAs were analyzed for the effects of MUC1-C on global transcriptional profiles.
 
Contributor(s) Kufe D, Liu S, Yamashita N, Long MD
Citation(s) 33495298, 35681561, 36754452, 37821650, 38740827
Submission date Jan 02, 2021
Last update date May 31, 2024
Contact name Qiang Hu
E-mail(s) Qiang.Hu@RoswellPark.org
Organization name Roswell Park Cancer Institute
Street address Elm & Carlton Streets
City Buffalo
State/province NY
ZIP/Postal code 14263
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (6)
GSM4998116 BT549_DOXminus_1
GSM4998117 BT549_DOXminus_2
GSM4998118 BT549_DOXminus_3
Relations
BioProject PRJNA689212
SRA SRP300048

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164141_BT549_RawCounts_Matrix.csv.gz 433.0 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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