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Series GSE163775 Query DataSets for GSE163775
Status Public on Oct 07, 2021
Title Activity-dependent modulation of synapse-regulating genes in astrocytes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Analysis of astrocyte heterogeneity in the developing mouse visual cortex, and identification of genes regulated by neuronal and astrocyte activity
Overall design Profile of glial cell nuclear mRNA at single cell level in P14 mouse visual cortex, from WT, VGlut2 cKO and Ip3r2 KO mice. 2 replicates for each genotype, each contains pooled tissue from 2 mice (4 biological replicates for each genotype total)
Contributor(s) Farhy-Tselnicker I, Liu H, Shokhirev MN, Ecker JR, Allen NJ
Citation(s) 34494546
Submission date Dec 23, 2020
Last update date Oct 07, 2021
Contact name Nicola Allen
Organization name Salk Institute
Street address 10010 North Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (8)
GSM4987000 IF1
GSM4987001 IF2
GSM4987002 IF3
BioProject PRJNA687513
SRA SRP299108

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163775_VIS_P14_10X.pass_qc.cell_metadata.csv.gz 2.2 Mb (ftp)(http) CSV
GSE163775_VIS_P14_10X.pass_qc.counts.h5ad.gz 106.3 Mb (ftp)(http) H5AD
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Raw data are available in SRA
Processed data are available on Series record

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