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Series GSE162850 Query DataSets for GSE162850
Status Public on Jan 26, 2022
Title H2R signaling maintains neutrophil homeostasis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary H2R deficiency accelerated progression of colitis-associated colon tumors. To identify precise expression pattern of H2R in immune cells, we performed quantitative RT-PCR and revealed that H2R is highly expressed in neutrophils. In mice, H2R deficiency significantly promoted infiltration of neutrophils into both inflammation sites and colon tumors. To precisely elucidate the downstream effects of H2R activation in neutrophils, low-density (LDNs) and high-density (HDNs) neutrophils were enriched from casein-elicited peritoneal cells of wild type and H2R deficient mice, and extracted total RNA were subjected to RNA sequencing. H2R-deficient HDNs not only presented more pro-inflammatory features through NF-kB and MAPK pathways, but also significantly suppressed T cell proliferation, which is essential for cellular immunity. On the other hand, LDNs with no H2R activation displayed a more immature phenotype compared to WT LDNs, with enhanced MYC pathway downstream expressions and a reduced expression of the maturation marker TLR4.
 
Overall design RNA-seq of H2R deficient and wildtype low density and high density neutrophils.
 
Contributor(s) Shi Z, Mori-Akiyama Y, Versalovic J
Citation(s) 34781022
Submission date Dec 08, 2020
Last update date Jan 27, 2022
Contact name Zhongcheng Shi
E-mail(s) zhongchs@bcm.edu
Phone 832-824-0814
Organization name Baylor College of Medicine
Department Pathology and Immunology
Street address 1102 Bates
City Houston
State/province TEXAS
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM4962881 KH1
GSM4962882 KH2
GSM4962883 KL1
Relations
BioProject PRJNA683590
SRA SRP297061

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162850_RAW.tar 26.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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