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Series GSE162709 Query DataSets for GSE162709
Status Public on Dec 05, 2020
Title Characterization of the cellular adaptation during biofilm formation in Gram positive bacteria
Organisms Staphylococcus aureus; Enterococcus faecalis
Experiment type Expression profiling by high throughput sequencing
Summary Cellular adaptation during biofilm formation in Gram positive bacteria
 
Overall design Biofilm formation mRNA profiles of S. aureus SH1000, S. aureus USA300, E. faecalis V583 and E. faecalis 29212 compared to their planktonic state, in either TSBg(s) or BHIg(s) medium, in 3 biological replicates.
 
Contributor(s) Martin G, Museau L, Arielle M, Pascale BB
Citation(s) 34935415
Submission date Dec 04, 2020
Last update date Jan 10, 2022
Contact name Pascale B. Beauregard
E-mail(s) pascale.b.beauregard@usherbrooke.ca
Organization name Université de Sherbrooke
Department Département de Biologie
Street address 2500 Boulevard de l'Université
City Sherbrooke
State/province Quebec
ZIP/Postal code J1K 2R1
Country Canada
 
Platforms (2)
GPL24034 Illumina NextSeq 500 (Staphylococcus aureus)
GPL29473 Illumina NextSeq 500 (Enterococcus faecalis)
Samples (48)
GSM4957688 S_aureus_SH1000_planktonic_TSB_1
GSM4957689 S_aureus_SH1000_planktonic_TSB_2
GSM4957690 S_aureus_SH1000_planktonic_TSB_3
Relations
BioProject PRJNA682641
SRA SRP295997

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162709_Geneious_DEGs_E_faecalis_29212_Biofilm_vs_Planktonic_BHI.csv.gz 923.7 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_E_faecalis_29212_Biofilm_vs_Planktonic_BHI_TSB.csv.gz 925.0 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_E_faecalis_29212_Biofilm_vs_Planktonic_TSB.csv.gz 923.0 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_E_faecalis_V583_Biofilm_vs_Planktonic_BHI.csv.gz 1.0 Mb (ftp)(http) CSV
GSE162709_Geneious_DEGs_E_faecalis_V583_Biofilm_vs_Planktonic_BHI_TSB.csv.gz 1.0 Mb (ftp)(http) CSV
GSE162709_Geneious_DEGs_E_faecalis_V583_Biofilm_vs_Planktonic_TSB.csv.gz 1.0 Mb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_SH1000_Biofilm_vs_Planktonic_BHI.csv.gz 904.5 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_SH1000_Biofilm_vs_Planktonic_BHI_TSB.csv.gz 907.7 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_SH1000_Biofilm_vs_Planktonic_TSB.csv.gz 898.4 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_USA300_Biofilm_vs_Planktonic_BHI.csv.gz 884.5 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_USA300_Biofilm_vs_Planktonic_BHI_TSB.csv.gz 888.2 Kb (ftp)(http) CSV
GSE162709_Geneious_DEGs_S_aureus_USA300_Biofilm_vs_Planktonic_TSB.csv.gz 875.6 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data provided as supplementary file
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