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Series GSE161387 Query DataSets for GSE161387
Status Public on Apr 02, 2021
Title High proliferation and delamination during skin epidermal stratification
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The development of complex stratified epithelial barriers in mammals is initiated from single-layered epithelia. How stratification is initiated and fueled are still open questions. Previous studies on skin epidermal stratification suggested a central role for perpendicular/asymmetric cell division orientation of the basal keratinocyte progenitors. Here, we use centrosomes, that organize the mitotic spindle, to test whether cell division orientation and stratification are linked. Genetically ablating centrosomes from the developing epidermis leads to the activation of the p53-, 53BP1- and USP28-dependent mitotic surveillance pathway causing a thinner epidermis and hair follicle arrest. The centrosome/p53-double mutant keratinocyte progenitors significantly alter their division orientation in the later stages without majorly affecting epidermal differentiation. Together with time-lapse imaging and tissue growth dynamics measurements, the data suggest that the first and major phase of epidermal development is boosted by high proliferation rates in both basal and suprabasally-committed keratinocytes as well as cell delamination, whereas the second phase maybe uncoupled from the division orientation of the basal progenitors. The data provide insights for tissue homeostasis and hyperproliferative diseases that may recapitulate developmental programs.
 
Overall design RNA-Seq analysis from mRNA of primary keratinocytes at P0 or skin epidermis at E13.5 with K14-Cre-specific depletion of Sas-4 and controls. Four replicates for each condition were used.
 
Contributor(s) Bazzi H, Damen M
Citation(s) 34050161
Submission date Nov 12, 2020
Last update date Jul 02, 2021
Contact name Hisham Bazzi
Organization name University Hospital Cologne
Department CECAD & Dermatology
Lab Bazzi Lab
Street address Joseph-Stelzmann-Straße 26
City Cologne
State/province NRW
ZIP/Postal code 50931
Country Germany
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (16)
GSM4906371 primary mouse epidermal keratinocytes_P0_Sas-4_ control_1
GSM4906372 primary mouse epidermal keratinocytes_P0_Sas-4_ control_2
GSM4906373 primary mouse epidermal keratinocytes_P0_Sas-4_ control_3
Relations
BioProject PRJNA677993
SRA SRP292409

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161387_EXPORT_FPKM_RUN2424_KS_P0.xlsx 7.9 Mb (ftp)(http) XLSX
GSE161387_EXPORT_FPKM_RUN2448_KS_E13point5.xlsx 6.3 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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