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Series GSE161307 Query DataSets for GSE161307
Status Public on May 09, 2022
Title Genome-wide analysis of chromatin structure changes upon MyoD binding in proliferative myoblasts during the cell cycle
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We evaluated the chromatin structure around MyoD-bound genome regions during the cell cycle by chromatin immunoprecipitation sequencing.
Overall design We performed RNA-seq and ChIP-seq in proliferative mouse C2C12 myoblasts during three phases (G1, S, G2/M) of the cell cycle.
Contributor(s) Wu Q, Fujii T, Harada A, Tomimatsu K, Miyawaki-Kuwakado A, Maehara K, Ohkawa Y
Citation(s) 33479729
Submission date Nov 11, 2020
Last update date May 11, 2022
Contact name Yasuyuki Ohkawa
Organization name Medical Institute of Bioregulation
Lab Division of Transcriptomics
Street address 3-1-1 Maidashi
City Fukuoka
ZIP/Postal code 8128582
Country Japan
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (30)
GSM4904619 C2C12-G-G1-replicate1
GSM4904620 C2C12-G-G1-replicate2
GSM4904621 C2C12-G-G2M-replicate1
BioProject PRJNA676168
SRA SRP292233

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Supplementary file Size Download File type/resource
GSE161307_RAW.tar 2.2 Gb (http)(custom) TAR (of BW)
GSE161307_kudou_mRNAseq_genes_featurecounts.txt.gz 2.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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