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Series GSE160890 Query DataSets for GSE160890
Status Public on Feb 28, 2022
Title KMT2C/KMT2D (MLL3/MLL4) Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary PLAC-seq, mRNA-seq, and ChIP-seq experiments in mouse embryonic stem cells and neural progenitor cells in the presence or absence of MLL3/4 catalytic activity and MLL2.
 
Overall design ChIP-seq experiments in mouse embryonic stem cells and neural progenitor cells in the presence or absence of MLL3/4 catalytic activity and MLL2.
 
Contributor(s) Kubo N, Ren B
Citation Naoki Kubo, Rong Hu, Zhen Ye, and Bing Ren. MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation. bioRxiv 2021.03.17.435905; doi:10.1101/2021.03.17.435905
Submission date Nov 05, 2020
Last update date Jul 29, 2023
Contact name Bing Ren
Organization name University of California, San Diego School of Medicine
Street address 9500 Gilman Dr., CMM-East, Admin Area/Rm 2071
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (3)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (87)
GSM4885563 H3K4me1_ChIP_ESC_WT_rep1
GSM4885564 H3K4me1_ChIP_ESC_WT_rep2
GSM4885565 H3K4me1_ChIP_ESC_Mll34dCD_rep1
This SubSeries is part of SuperSeries:
GSE160892 Mll3/Mll4 catalytic activity is necessary for de novo enhancer-promoter contacts during embryonic stem cell differentiation
Relations
BioProject PRJNA674790
SRA SRP291292

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160890_chip_h3k27ac_esc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k27ac_esc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k27ac_npc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k27ac_npc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k27me3_esc_mll34dcd.bw 1.2 Gb (ftp)(http) BW
GSE160890_chip_h3k27me3_esc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k27me3_npc_mll34dcd.bw 1.2 Gb (ftp)(http) BW
GSE160890_chip_h3k27me3_npc_wt.bw 1.2 Gb (ftp)(http) BW
GSE160890_chip_h3k4me1_esc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me1_esc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me1_npc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me1_npc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me3_esc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me3_esc_wt.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me3_npc_mll34dcd.bw 1.1 Gb (ftp)(http) BW
GSE160890_chip_h3k4me3_npc_wt.bw 1.2 Gb (ftp)(http) BW
GSE160890_k27ac_esc2_mll34dcd-mll2dtag.bw 214.1 Mb (ftp)(http) BW
GSE160890_k27ac_esc2_wt-mll2dtag.bw 232.5 Mb (ftp)(http) BW
GSE160890_k27ac_esc2_wt.bw 221.0 Mb (ftp)(http) BW
GSE160890_k27ac_npc2_mll34dcd-mll2dtag.bw 236.5 Mb (ftp)(http) BW
GSE160890_k27ac_npc2_mll34dcd.bw 224.2 Mb (ftp)(http) BW
GSE160890_k27ac_npc2_wt-mll2dtag.bw 227.3 Mb (ftp)(http) BW
GSE160890_k27ac_npc2_wt.bw 241.9 Mb (ftp)(http) BW
GSE160890_k4me1_esc2_mll34dcd-mll2dtag.bw 208.9 Mb (ftp)(http) BW
GSE160890_k4me1_esc2_mll34dcd.bw 217.5 Mb (ftp)(http) BW
GSE160890_k4me1_esc2_wt-mll2dtag.bw 233.0 Mb (ftp)(http) BW
GSE160890_k4me1_esc2_wt.bw 221.9 Mb (ftp)(http) BW
GSE160890_k4me1_npc2_mll34dcd-mll2dtag.bw 200.4 Mb (ftp)(http) BW
GSE160890_k4me1_npc2_mll34dcd.bw 218.3 Mb (ftp)(http) BW
GSE160890_k4me1_npc2_wt-mll2dtag.bw 198.5 Mb (ftp)(http) BW
GSE160890_k4me1_npc2_wt.bw 209.1 Mb (ftp)(http) BW
GSE160890_k4me3_esc2_mll34dcd-mll2dtag.bw 191.5 Mb (ftp)(http) BW
GSE160890_k4me3_esc2_mll34dcd.bw 231.2 Mb (ftp)(http) BW
GSE160890_k4me3_esc2_wt-mll2dtag.bw 191.5 Mb (ftp)(http) BW
GSE160890_k4me3_esc2_wt.bw 223.2 Mb (ftp)(http) BW
GSE160890_k4me3_npc2_mll34dcd-mll2dtag.bw 207.7 Mb (ftp)(http) BW
GSE160890_k4me3_npc2_mll34dcd.bw 225.5 Mb (ftp)(http) BW
GSE160890_k4me3_npc2_wt-mll2dtag.bw 209.3 Mb (ftp)(http) BW
GSE160890_k4me3_npc2_wt.bw 236.9 Mb (ftp)(http) BW
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Raw data are available in SRA
Processed data are available on Series record

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