NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE160518 Query DataSets for GSE160518
Status Public on Oct 31, 2020
Title ATAC-seq analysis of murine thymic iNKT subsets from C57BL/6 mice and Hivep3-deficient mice
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq analysis of murine thymic iNKT subsets from two independent C57BL/6 mice and two independent Hivep3-deficient mice
 
Overall design This subseries consists of biological replicates (Mouse_1 and Mouse_2) of Omni ATAC-seq experiments in wild-type and Hivep3-/- iNKT cell subsets.
 
Contributor(s) Gapin L
Citation(s) 33288744
Submission date Oct 30, 2020
Last update date Dec 15, 2020
Contact name Laurent Gapin
E-mail(s) laurent.gapin@cuanschutz.edu
Phone 303-724-8667
Organization name University of Colorado Anschutz Medical campus
Department Immunology and Microbiology
Street address 12800 E. 19th Ave.
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM4874418 C57BL/6 Thymic iNKT1 cells_Mouse1
GSM4874419 C57BL/6 Thymic iNKT2 cells_Mouse1
GSM4874420 C57BL/6 Thymic iNKT17 cells_Mouse1
Relations
BioProject PRJNA673423
SRA SRP290178

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160518_Normalized_Counts_Table.tsv.gz 5.6 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap