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Series GSE16029 Query DataSets for GSE16029
Status Public on Sep 01, 2009
Title Expression profiling of rainbow trout testicular development and spermatogenesis
Organism Oncorhynchus mykiss
Experiment type Expression profiling by array
Summary Trout spermatogenesis proceeds seasonally in a way that all morphological and cellular events tend to be synchronized. We thus used gonads at key stages of the male reproductive cycle together with isolated germ cell populations to study the changes in gene expression underlying testis development. Statistical analysis followed by clustering of expression profiles allowed the discrimination of sequential events of gene activation or repression during testis development and/or throughout the germline.
 
Overall design 38 samples covering 6 developmental stages (as defined in Gomez et al. 1998 Biol. Reprod. 58, 483-491) and 3 isolated germ cell populations were analysed. This included: - Testes at early stages containing slowly-dividing type A spermatogonia (Stage_I, n=5) or growing numbers of actively-dividing type B spermatogonia (Stages_IIa, n= 4; Stage_IIb, n= 4) - Maturing testes containing in addition large numbers of meiotic spermatocytes (Stage_IIIb, n=3) and post-meiotic spermatids (Stage_V, n=4) - Spawning testes containing essentially mature spermatozoa (Stage_VIII, n=3) - Fractions of isolated germ cells enriched in spermatogonia (Spermatogonia, N=6), spermatocytes (Spermatocyte, N=6) and spermatids (Spermatid, N=3).
 
Contributor(s) Rolland AD, Lareyre J, Goupil A, Montfort J, Ricordel M, Esquerré D, Hugot K, Houlgatte R, Chalmel F, Le Gac F
Citation(s) 19925684
Submission date May 08, 2009
Last update date Aug 31, 2012
Contact name Florence Le Gac
E-mail(s) Florence.Legac@rennes.inra.fr
Phone (33) 2 23 48 50 17
Fax (33) 2 23 48 50 20
URL http://w3.rennes.inra.fr/scribe/english/recherche/florence_legac.htm
Organization name Institut National de la Recherche Agronomique
Department Fish Reproduction Group
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platforms (1)
GPL3650 AGENAE_TroutGeneric2_9216
Samples (38)
GSM401168 testis Stage_I 1
GSM401169 testis Stage_I 2
GSM401170 testis Stage_I 3
Relations
BioProject PRJNA115383

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16029_RAW.tar 41.7 Mb (http)(custom) TAR (of QTF)
Processed data included within Sample table

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