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Series GSE160288 Query DataSets for GSE160288
Status Public on Dec 25, 2022
Title An Interactome Map of Maize (Zea mays L.)
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary These data include RNA-seq, circRNA-seq, and small RNA-seq of transcriptome, Ribo-seq of translatome and protein protein binary interactions by recombination-based library vs. library yeast-2-hybrid throughout the lifecycle of the maize inbred line B73.
 
Overall design We constructed an interactome involving genome, transcriptome, translatome and proteome.
 
Contributor(s) Han L, Qian J, Zhong W
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA669197
Submission date Oct 28, 2020
Last update date Dec 25, 2022
Contact name qian lin han
Organization name Huazhong Agricultural University
Street address Huazhong Agricultural University, No.1 Shizishan Street, Hongshan District
City wuhan
State/province hubei
ZIP/Postal code 430070
Country China
 
Platforms (3)
GPL25842 HiSeq X Ten (Zea mays)
GPL28862 BGISEQ-500 (Zea mays)
GPL29314 Sequel (Zea mays)
Samples (109)
GSM4870635 Group 5
GSM4870636 Group 5&6 rep1
GSM4870637 Group 8
Relations
SRA SRP288423

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160288_PPIs.txt.gz 2.1 Mb (ftp)(http) TXT
GSE160288_circRNA-CPM.txt.gz 715.3 Kb (ftp)(http) TXT
GSE160288_ribo-TPM.txt.gz 1.2 Mb (ftp)(http) TXT
GSE160288_sRNA-TPM.txt.gz 10.2 Mb (ftp)(http) TXT
GSE160288_totalRNA-TPM.txt.gz 1.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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