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Series GSE159580 Query DataSets for GSE159580
Status Public on Mar 01, 2021
Title Transcriptome in WT Col-0 and RLK7ECD-MIK2TK transgenic plants upon PIP1 treatment
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We tested PIP1-regulated gene transcription in Arabidopsis Wt (Col-0) and RLK7ECD-MIK2TK transformats (RM).
 
Overall design Ten-day old seedlings grown on 1/2MS medium were treated with or without 1 uM PIP1 for 1 or 6 hours. RNA was isolated for RNA sequencing analysis.Three biologic replicates were used for each treatment. cDNA library preparation and sequencing were carried out on an Illumina HiSeq 4000 platform with 150-nucleotide pair-end reads.
 
Contributor(s) Hou S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 19, 2020
Last update date Mar 01, 2021
Contact name Shuguo Hou
E-mail(s) houshuguo111@gmail.com
Phone 86-0531-86367370
Organization name Shandong Jianzhu University
Department School of Municipal & Environmental Engineering
Street address Fengming Road 1000, Shandong Jianzhu University
City Jinan
State/province Shandong
ZIP/Postal code 250100
Country China
 
Platforms (1)
GPL21785 Illumina HiSeq 4000 (Arabidopsis thaliana)
Samples (18)
GSM4832659 WT_0_1
GSM4832660 WT_0_2
GSM4832661 WT_0_3
Relations
BioProject PRJNA669813
SRA SRP287556

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159580_4_genes_fpkm_expression.txt.gz 7.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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