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Series GSE159283 Query DataSets for GSE159283
Status Public on Dec 07, 2020
Title Transcriptome analysis of mammary CD45+ CD4+ lymphocytes after immunization against E. coli P4 strain and homologous challenge
Organism Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary Methods: During the last trimester of the gestation, three heifers were immunized using intramuscular injections of heat-killed E. coli P4 emulsified in Montanide ISA 61VG® adjuvant (SEPPIC). Two months later, they received a mammary ductal injection of 50 µg protein from concentrated E. coli supernate as a booster. Control cows were injected intramuscularly with adjuvant only at the same dates. Cows were then challenged on average at 140 days in milk in one healthy quarter by infusion of a E. coli P4 bacterial suspension (10e3 bacteria in total). Cows were then euthanized 16 hours after inoculation for mammary tissue collection. After collagenase and DNase treatment and Percoll-gradient separation, CD45+ CD4+ mononuclear cells were sorted by flow cytometry. RNA was extracted and sequenced using Illumina protocol.
Results : Mammary Th17-polarized CD4 T cells predominate in the mammary tissue of cows immunized through the local route, and are activated after challenge with E. coli.
Conclusions: Local immunization promotes the development of TH17 immunity that correlated with protection.
 
Overall design During the last trimester of the gestation, three heifers were immunized using intramuscular injections of heat-killed E. coli P4 emulsified in Montanide ISA 61VG® adjuvant (SEPPIC). Two months later, they received a mammary ductal injection of 50 µg protein from concentrated E. coli supernate as a booster. Control cows were injected intramuscularly with adjuvant only at the same dates. Cows were then challenged on average at 140 days in milk in one healthy quarter by infusion of a E. coli P4 bacterial suspension (10e3 bacteria in total). Cows were then euthanized 16 hours after inoculation for mammary tissue collection. After collagenase and DNase treatment and Percoll-gradient separation, CD45+ CD4+ mononuclear cells were sorted by flow cytometry. RNA was extracted and sequenced using Illumina protocol.
 
Contributor(s) FOUCRAS G, CEBRON N, MAMAN S, RAINARD P
Citation(s) 33298970
https://doi.org/10.1038/s41541-020-00258-4
Submission date Oct 09, 2020
Last update date Dec 15, 2020
Contact name gilles FOUCRAS
E-mail(s) gilles.foucras@envt.fr
Organization name ENVT INRA
Street address 23 Chemin des Capelles
City TOULOUSE
State/province State/Province/Region
ZIP/Postal code 31300
Country France
 
Platforms (1)
GPL21659 Illumina HiSeq 3000 (Bos taurus)
Samples (4)
GSM4824861 CONT-control
GSM4824862 CONT-Inoculated
GSM4824863 IMM-control
Relations
BioProject PRJNA668294
SRA SRP286865

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159283_count_table.csv.gz 175.3 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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