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Series GSE158836 Query DataSets for GSE158836
Status Public on Oct 01, 2020
Title The SDHB Arg230His mutation causing familial paraganglioma alters glycolysis in a new Caenorhabditis elegans model
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary The conserved B-subunit of succinate dehydrogenase (SDH) participates in the TCA cycle and mitochondrial electron transport. The Arg230His mutation in SDHB causes heritable pheochromocytoma/paraganglioma (PPGL). In C. elegans, we generated an in vivo PPGL model (SDHB-1 Arg244His; equivalent to human Arg230His) which manifests delayed development, shortened lifespan, attenuated ATP production and reduced mitochondrial number. Although succinate is elevated in both missense and null sdhb-1(gk165) mutants, transcriptomic comparison suggests very different causal mechanisms that are supported by metabolic analysis where only Arg244His (not null) worms elevate lactate/pyruvate levels, pointing to a missense-induced, ‘Warburg’-like aberrant glycolysis. In silico predictions of the SDHA-B dimer structure demonstrate that Arg230His modifies the catalytic cleft despite the latter’s remoteness from the mutation site. We hypothesise that Arg230His SDHB mutation rewires metabolism, reminiscent of metabolic reprogramming in cancer. Our tractable model provides a novel tool to investigate the metastatic propensity of this familial cancer and our approach may illuminate wider SDH pathology.
 
Overall design Transcriptomic analysis of sdhb-1 deletional and R244H point mutant worms versus stage-specific wild-type and transgenic controls.
 
Contributor(s) Saskői É, Nyírő G, Likó I, Patócs A, Mehta A, Takacs-Vellai K
Citation(s) 32859697
Submission date Sep 30, 2020
Last update date Oct 26, 2020
Contact name István Likó
E-mail(s) istvanliko@gmail.com
Organization name Semmelweis University
Lab HAS-SE Momentum Hereditary Endocrine Tumour Syndromes Research Group, Hungarian Academy of Sciences and Semmelweis University
Street address Üllői út 26.
City Budapest
ZIP/Postal code H - 1085
Country Hungary
 
Platforms (1)
GPL15716 Illumina MiSeq (Caenorhabditis elegans)
Samples (6)
GSM4811884 cel4SDHB1DELTR
GSM4811885 cel5SDHB1PMTR
GSM4811886 cel1N2L2
Relations
BioProject PRJNA666675
SRA SRP285937

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158836_rpkm_filtered_FC_DGElist_ann.csv.gz 3.9 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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