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| Status |
Public on Oct 14, 2020 |
| Title |
circRNA expression data from human non-small cell lung cancer tissues and the correponding non-cancerous tissues |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by array
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| Summary |
Circular RNAs (circRNAs) are a class of covalently closed single-stranded RNAs that have been demonstrated to involve in cancer progression. Here, we identify circNDUFB2 is downregulated in non-small cell lung cancer (NSCLC) tissues, and it negatively correlates with the malignant features. Elevated circNDUFB2 inhibits growth and metastasis of NSCLC cells. circNDUFB2 functions as a scaffold to enhance interaction of TRIM25 with IGF2BPs by forming a TRIM25/circNDUFB2/IGF2BPs ternary complex. The resultant ternary complex facilitates ubiquitination degradation of IGF2BPs, and N6-methyladenosine (m6A) modification of circNDUFB2 increases ubiquitination efficiency of TRIM25 for IGF2BPs. Moreover, circNDUFB2 can be recognized by RIG-I, then activates RIG-I-MAVS signaling cascades and recruits immune cells into tumor microenvironment (TME). Our data provide evidences that circNDUFB2 participates in degradation of IGF2BPs and activation of anti-tumor immunity in NSCLC progression. These findings reveal a dual-role pattern of circNDUFB2 action involved in protein ubiquitination degradation and cellular immune response.
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| Overall design |
Total RNA from three pairs human non-small cell lung cancer tissues and correponding non-cancerous tissues were isolated and purified. The sample preparation and microarray hybridization were performed based on the Arraystar’s standard protocols. Briefly, total RNA from each sample was amplified and transcribed into fluorescent cRNA utilizing random primer according to Arraystar’s Super RNA Labeling protocol (Arraystar Inc.). The labeled cRNAs were hybridized onto the Arraystar Human circRNA Array (6x7K, Arraystar). After having washed the slides, the arrays were scanned by the Axon GenePix 4000B microarray scanner.
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| Contributor(s) |
Li B, Zhu L, Qin W |
| Citation(s) |
33436560 |
| |
| Submission date |
Sep 28, 2020 |
| Last update date |
Jan 26, 2021 |
| Contact name |
Botai Li |
| E-mail(s) |
libotai@sjtu.edu.cn
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| Phone |
15221287275
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| Organization name |
Shanghai Cancer Institute
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| Street address |
No. 25/Ln 2200 Xie-Tu Road
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| City |
Shanghai |
| ZIP/Postal code |
200032 |
| Country |
China |
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| Platforms (1) |
| GPL19978 |
Agilent-069978 Arraystar Human CircRNA microarray V1 |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA666207 |
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