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Series GSE157570 Query DataSets for GSE157570
Status Public on Sep 01, 2021
Title Physiologically-relevant Bisphenol A levels alter the developmental trajectory of an in vitro model of mouse Primordial Germ Cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background: Animal-based studies indicate that Bisphenol A (BPA) exposure is detrimental to reproductive health, but its impact on the earliest stages of germ cell development remain poorly defined.
Objective: Using a murine in vitro model of early germ cell specification and differentiation, we sought to assess whether exposure to low levels of BPA prior to Primordial Germ Cell (PGC) formation alters their differentiation trajectory and unique molecular program.
Methods: We used an established method of in vitro differentiation of mouse Embryonic Stem Cells (ESCs) into Epiblast-like Cells (EpiLCs) followed by PGC-Like Cells (PGCLCs) which together recapitulates defined stages of early germ cell development. Cellular consequences were determined using hemocytometer-based cell counting, fixation and intracellular staining followed by flow cytometry/FACS on cells exposed to increasing doses of BPA. We also generated RNA-seq libraries from RNA extracted from FACS-purified PGCLCs and performed transcriptome analysis using bioinformatics-based approaches, to interrogate and characterise gene expression changes resulting from BPA exposure.
Results: Exposure of EpiLCs to BPA resulted in a dose-dependent increase in cell number, associated with an increase proportion of cells in S-phase as well as a reduced proportion undergoing apoptosis. Exposure also resulted in a greater proportion of EpiLCs showing signs of DNA damage. Remarkably, EpiLC exposure did not negatively impact PGC specification and resulted in dose-dependent increase in PGCLC proliferation. However, PGCLC transcriptome analysis revealed an aberrant program with significant deregulation of X-linked genes and retrotransposon expression. Differential gene expression analysis also revealed the deregulation of genes associated with lipid metabolism as well as deregulated expression of genes associated with later stages of gametogenesis.
Conclusions: Our findings represent the first characterisation of the consequences of early BPA exposure on a model of PGC development, highlighting altered cell behaviour and underlying pathways and molecular processes.
 
Overall design EpiLC and PGCLC mRNA profiles from untreated and 100nM BPA-exposed cells
 
Contributor(s) Ooi SK, Allard P
Citation(s) 34585602
Submission date Sep 06, 2020
Last update date Dec 02, 2021
Contact name Steen Kian Thye Ooi
E-mail(s) steen001@g.ucla.edu
Organization name UCLA
Department Institute for Society and Genetics
Lab Allard
Street address 621 Charles E. Young Drive S.
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM4770799 EpiLC_Untreated_Rep1
GSM4770800 EpiLC_Untreated_Rep2
GSM4770801 EpiLC_Untreated_Rep3
Relations
BioProject PRJNA661766
SRA SRP280285

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157570_BVSC_H18_d5_cpm_FC_FDR.xlsx 2.2 Mb (ftp)(http) XLSX
GSE157570_EpiLC_cpm_Matrix.txt.gz 569.8 Kb (ftp)(http) TXT
GSE157570_PGCLC_cpm_Matrix.txt.gz 671.9 Kb (ftp)(http) TXT
GSE157570_RAW.tar 930.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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