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| Status |
Public on Aug 15, 2009 |
| Title |
Transcriptome analysis of time couse of leafy spurge infection with Xam |
| Platform organisms |
Manihot esculenta; Euphorbia esula |
| Sample organism |
Euphorbia esula |
| Experiment type |
Expression profiling by array
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| Summary |
The goal of this study was to identify signaling processes associated with infection and recovery of leafy spurge inoculated with Xanthomonas axonopodis pv. manihotis (Xam).
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| Overall design |
Two dye-swap technical replicates for each of 3 biological replicates for each treatment were analyzed. A time course analysis of Xam infected and mock inoculated leafy spurge was performed. Time points were 1, 7 and 21 days after inoculation (or mock inoculation). Thus, 36 labeled samples were hybridized in a 2 dye rolling circle hybridization scheme to 18 arrays.
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| Contributor(s) |
Santana MA, Horvath DP |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Apr 20, 2009 |
| Last update date |
Mar 21, 2012 |
| Contact name |
David Horvath |
| E-mail(s) |
david.horvath@ars.usda.gov
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| Phone |
701-239-1255
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| Organization name |
US Dept. Agriculture
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| Department |
Agr. Research Service
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| Lab |
Bioscience Research Lab
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| Street address |
1605 Albrecht Blvd
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| City |
Fargo |
| State/province |
ND |
| ZIP/Postal code |
58105 |
| Country |
USA |
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| Platforms (1) |
| GPL4655 |
High density Euphorbia esula and Manihot esculenta array |
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| Samples (36)
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| GSM394742 |
leafy spurge, mock inoculated, 21 DAI, rep 1 |
| GSM394744 |
Leafy spurge, mock inoculated, 21 DAI, rep2, CY5 |
| GSM394763 |
Leafy spurge, mock inoculated, 21 DAI, rep3, CY5 |
| GSM394764 |
Leafy spurge, mock inoculated, 21 DAI, rep1, CY3 |
| GSM394769 |
Leafy spurge, mock inoculated, 21 DAI, rep2, CY3 |
| GSM394770 |
Leafy spurge, mock inoculated, 21 DAI, rep3, CY3 |
| GSM394771 |
Leafy spurge, mock inoculated, 1 DAI, rep1, CY5 |
| GSM394772 |
Leafy spurge, mock inoculated, 1 DAI, rep2, CY5 |
| GSM394773 |
Leafy spurge, mock inoculated, 1 DAI, rep3, CY5 |
| GSM394774 |
Leafy spurge, mock inoculated, 1 DAI, rep1, CY3 |
| GSM394775 |
Leafy spurge, mock inoculated, 1 DAI, rep2, CY3 |
| GSM394776 |
Leafy spurge, mock inoculated, 1 DAI, rep3, CY3 |
| GSM394777 |
Leafy spurge, mock inoculated, 7 DAI, rep1, CY5 |
| GSM394779 |
Leafy spurge, mock inoculated, 7 DAI, rep2, CY5 |
| GSM394780 |
Leafy spurge, mock inoculated, 7 DAI, rep3, CY5 |
| GSM394781 |
Leafy spurge, mock inoculated, 7 DAI, rep1, CY3 |
| GSM394782 |
Leafy spurge, mock inoculated, 7 DAI, rep2, CY3 |
| GSM394783 |
Leafy spurge, mock inoculated, 7 DAI, rep3, CY3 |
| GSM394784 |
Leafy spurge, Xam inoculated, 21 DAI, rep1, CY5 |
| GSM394786 |
Leafy spurge, Xam inoculated, 21 DAI, rep2, CY5 |
| GSM394787 |
Leafy spurge, Xam inoculated, 21 DAI, rep3, CY5 |
| GSM394788 |
Leafy spurge, Xam inoculated, 21 DAI, rep1, CY3 |
| GSM394790 |
Leafy spurge, Xam inoculated, 21 DAI, rep2, CY3 |
| GSM394791 |
Leafy spurge, Xam inoculated, 21 DAI, rep3, CY3 |
| GSM394792 |
Leafy spurge, Xam inoculated, 1 DAI, rep1, CY5 |
| GSM394793 |
Leafy spurge, Xam inoculated, 1 DAI, rep2, CY5 |
| GSM394794 |
Leafy spurge, Xam inoculated, 1 DAI, rep3, CY5 |
| GSM394795 |
Leafy spurge, Xam inoculated, 1 DAI, rep1, CY3 |
| GSM394796 |
Leafy spurge, Xam inoculated, 1 DAI, rep2, CY3 |
| GSM394943 |
Leafy spurge, Xam inoculated, 1 DAI, rep3, CY3 |
| GSM394944 |
Leafy spurge, Xam inoculated, 7 DAI, rep1, CY5 |
| GSM395091 |
Leafy spurge, Xam inoculated, 7 DAI, rep2, CY5 |
| GSM395187 |
Leafy spurge, Xam inoculated, 7 DAI, rep3, CY5 |
| GSM395238 |
Leafy spurge, Xam inoculated, 7 DAI, rep1, CY3 |
| GSM395386 |
Leafy spurge, Xam inoculated, 7 DAI, rep2, CY3 |
| GSM395387 |
Leafy spurge, Xam inoculated, 7 DAI, rep3, CY3 |
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| Relations |
| BioProject |
PRJNA116775 |
| Supplementary data files not provided |
| Processed data included within Sample table |
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