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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 16, 2020 |
| Title |
Mouse Olfactory Epithelium, whole olfactory mucosa, mouse |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The lineage of wild-type horizontal basal cells (HBC) stem cells from the olfactory epithelium were profiled by single-cell RNA-Seq (10X v3 chemistry) to identify differences in aged versus not-aged adult stem cells mRNA expression profiles
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| Overall design |
Whole olfactory epithelium cells are FACS-purified via live cell repoter in young and old adult mice. A minimum of two biological replicates were collected for each time-point/experimental condition.
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| Contributor(s) |
Chance RK, Chou H |
| Citation(s) |
32937591 |
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| Submission date |
Aug 28, 2020 |
| Last update date |
Jan 24, 2022 |
| Contact name |
Rebecca K. Chance |
| E-mail(s) |
rchance@berkeley.edu
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| Phone |
5106429887
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| Organization name |
UC Berkeley
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| Department |
Molecular and Cell Biology
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| Lab |
John Ngai
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| Street address |
265 LSA #3200
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| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94720 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (12)
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| GSM4752981 |
un-injured (UI), young, replicate 1, 10X chip channel A |
| GSM4752982 |
un-injured (UI), young, replicate 1, 10X chip channel B |
| GSM4752983 |
un-injured (UI), old, replicate 1, 10X chip channel A |
| GSM4752984 |
un-injured (UI), old, replicate 1, 10X chip channel B |
| GSM4752985 |
un-injured (UI), young, replicate 2, 10X chip channel A |
| GSM4752986 |
un-injured (UI), young, replicate 2, 10X chip channel B |
| GSM4752987 |
un-injured (UI), old, replicate 2, 10X chip channel A |
| GSM4752988 |
un-injured (UI), old, replicate 2, 10X chip channel B |
| GSM4752989 |
un-injured (UI), young, replicate 3, 10X chip channel A |
| GSM4752990 |
un-injured (UI), young, replicate 3, 10X chip channel B |
| GSM4752991 |
un-injured (UI), old, replicate 3, 10X chip channel A |
| GSM4752992 |
un-injured (UI), old, replicate 3, 10X chip channel B |
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| This SubSeries is part of SuperSeries: |
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| Relations |
| BioProject |
PRJNA660060 |
| SRA |
SRP279271 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE157100_barcodes.tsv.gz |
264.3 Kb |
(ftp)(http) |
TSV |
| GSE157100_features.tsv.gz |
272.8 Kb |
(ftp)(http) |
TSV |
| GSE157100_matrix.mtx.gz |
606.3 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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