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Series GSE156915 Query DataSets for GSE156915
Status Public on Dec 31, 2020
Title In-depth clinical and biological exploration of DNA Damage Immune Response (DDIR) as a biomarker for oxaliplatin use in colorectal cancer
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Purpose: The DNA Damage Immune Response (DDIR) assay was developed in breast cancer (BC) based on biology associated with deficiencies in homologous recombination and Fanconi Anemia (HR/FA) pathways. A positive DDIR call identifies patients likely to respond to platinum-based chemotherapies in breast and oesophageal cancers. In colorectal cancer (CRC) there is currently no biomarker to predict response to oxaliplatin. We tested the ability of the DDIR assay to predict response to oxaliplatin-based chemotherapy in CRC and characterised the biology in DDIR-positive CRC.
Methods: Samples and clinical data were assessed according to DDIR status from patients who received either 5FU or FOLFOX within the FOCUS trial (n=361, stage 4), or neo-adjuvant FOLFOX in the FOxTROT trial (n=97, stage 2/3). Whole transcriptome, mutation and immunohistochemistry data of these samples were used to interrogate the biology of DDIR in CRC.
Results: Contrary to our hypothesis, DDIR negative patients displayed a trend towards improved outcome for oxaliplatin-based chemotherapy compared to DDIR positive patients. DDIR positivity was associated with Microsatellite Instability (MSI) and Colorectal Molecular Subtype 1 (CMS1). Refinement of the DDIR signature, based on overlapping interferon-related chemokine signalling associated with DDIR positivity across CRC and BC cohorts, further confirmed that the DDIR assay did not have predictive value for oxaliplatin-based chemotherapy in CRC.
Conclusions: DDIR positivity does not predict improved response following oxaliplatin treatment in CRC. However, data presented here suggests the potential of the DDIR assay in identifying immune-rich tumours that may benefit from immune checkpoint blockade, beyond current use of MSI status.
 
Overall design 361 Samples analysed, no replicates nor reference samples used
 
Contributor(s) Blake A
Citation(s) 33028592
Submission date Aug 26, 2020
Last update date Oct 27, 2021
Contact name Andrew Blake
E-mail(s) andrew.blake@oncology.ox.ac.uk
Organization name Department of Oncology
Street address Old Road Campus
City Oxford
State/province Oxfordshire, UK
ZIP/Postal code OX3 7DQ
Country United Kingdom
 
Platforms (1)
GPL29069 [ADXECv1a520743] Almac Diagnostics Custom Xcel array [Gene.Symbol version]
Samples (361)
GSM4747718 SC00124A
GSM4747719 SC00125A
GSM4747720 SC00126A
Relations
BioProject PRJNA659503

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156915_RAW.tar 1.5 Gb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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