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GEO accession:
Series GSE156846
Query DataSets for GSE156846
Status
Public on Apr 05, 2021
Title
Glis1 regulates gene expression in trabacular meshwork
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
Glis1 regulates the fuctional properties of trabacular meshwork via regulating the gene expression at transcriptional level.
Overall design
Trabacular meshwork cells were knockdown and overexpressed with Glis1 expression and followed by RNA seq and ChIP seq for further analysis.
Contributor(s)
Srivastava C
,
Jetten AM
Citation(s)
34385434
Submission date
Aug 25, 2020
Last update date
Aug 24, 2021
Contact name
Anton M Jetten
E-mail(s)
jetten@niehs.nih.gov
Phone
984-287-4094
Organization name
NIEHS, NIH
Department
DIR
Lab
Cell Biology
Street address
111 TW Alexander Drive
City
Research Triangle Park
State/province
NC
ZIP/Postal code
27709
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (23)
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GSM4745346
ChIPseq-TM5-DoxNeg-Glis1
GSM4745347
ChIPseq-TM5-DoxNeg-input
GSM4745348
ChIPseq-TM5-DoxPos-Glis1
GSM4745349
ChIPseq-TM5-DoxPos-input
GSM4745350
RNAseq-hTM_Control_shRNA-rep1
GSM4745351
RNAseq-hTM_Control_shRNA-rep2
GSM4745352
RNAseq-hTM_Control_shRNA-rep3
GSM4745353
RNAseq-hTM_Glis1_shRNA_1-rep1
GSM4745354
RNAseq-hTM_Glis1_shRNA_4-rep1
GSM4745355
RNAseq-hTM_Glis1_shRNA_5-rep1
GSM4745356
RNAseq-hTM_Glis1_shRNA_5-rep2
GSM4745357
RNAseq-hTM_Glis1_Control-rep1
GSM4745358
RNAseq-hTM_Glis1_Control-rep2
GSM4745359
RNAseq-hTM_Glis1_DOXneg-rep1
GSM4745360
RNAseq-hTM_Glis1_DOXneg-rep2
GSM4745361
RNAseq-hTM_Glis1_DOXpos-rep1
GSM4745362
RNAseq-hTM_Glis1_DOXpos-rep2
GSM4745363
RNAseq-TM5_Glis1_DOXneg-rep1
GSM4745364
RNAseq-TM5_Glis1_DOXneg-rep2
GSM4745365
RNAseq-TM5_Glis1_DOXneg-rep3
GSM4745366
RNAseq-TM5_Glis1_DOXpos-rep1
GSM4745367
RNAseq-TM5_Glis1_DOXpos-rep2
GSM4745368
RNAseq-TM5_Glis1_DOXpos-rep3
Relations
BioProject
PRJNA659363
SRA
SRP278846
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE156846_ChIPseq-TM5-Glis1.peaks.bed.gz
375.9 Kb
(ftp)
(http)
BED
GSE156846_RAW.tar
5.7 Gb
(http)
(custom)
TAR (of BIGWIG)
GSE156846_RNAseq_counts-per-gene.TM5_overexpr.txt.gz
1.1 Mb
(ftp)
(http)
TXT
GSE156846_RNAseq_counts-per-gene.hTM_overexpr.txt.gz
1.1 Mb
(ftp)
(http)
TXT
GSE156846_RNAseq_counts-per-gene.hTM_shRNA.txt.gz
1.1 Mb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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