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Series GSE156784 Query DataSets for GSE156784
Status Public on Feb 03, 2021
Title Enhanced metabolic potentials and functional gene interactions of microbial stress response towards high elevation in freshwater lakes
Platform organisms Bacteria; Archaea; Eukaryota; Viruses
Sample organism uncultured microorganism
Experiment type Other
Summary Here, we applied a microarray-based metagenomics technology termed GeoChip 5.0 to examined functional gene structure of microbes in four lakes at low and high elevations of approximately 530 and 4,600 m a.s.l., respectively.
 
Overall design In this study, to investigate the influence of elevation on microbial functional genes in aquatic environments, we focused on four shallow freshwater lakes at comparable elevations, two HELs (at 4,652 m and 4,608 m, respectively) and two LELs (at 530 m and 525 m, respectively), at Siguniang Mountain in Sichuan province, China. Six sampling sites were set in each lake. At each site, approximately 1 L of water was collected from surface waters (top 50 cm) for microbial Geochip analyses
 
Contributor(s) Wu QL, Zeng J
Citation(s) 33519731
Submission date Aug 24, 2020
Last update date Feb 03, 2021
Contact name Huabing Li
E-mail(s) hbli@niglas.ac.cn
Organization name Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences
Street address East Beijing Road 73
City Nanjing
ZIP/Postal code 210008
Country China
 
Platforms (1)
GPL29063 GeoChip 5.0
Samples (24)
GSM4743828 low elevation lake water microbial gene_1
GSM4743829 low elevation lake water microbial gene_2
GSM4743830 low elevation lake water microbial gene_3
Relations
BioProject PRJNA659019

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156784_RAW.tar 12.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
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