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Series GSE156337 Query DataSets for GSE156337
Status Public on Sep 24, 2020
Title Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
The linked supplementary file includes:
sheet 1: patient information
sheet 2: Top-25 genes HCC atlas clusters
sheet 3: Top-25 genes T cell clusters
sheet 4: Top-25 genes NK cell clusters
sheet 5: Top-25 genes Fibroblast clusters
sheet 6: Top-25 genes Hepatocyte clusters
sheet 7: Garnett Markers-whole atlas
sheet 8: Top-25 genes MNC clusters
sheet 9: Top-25 genes Endothelial clusters
sheet 10: Garnett Markers-myeloid
sheet 11: Spatial Transcriptomics
 
Citation(s) 32976798
Submission date Aug 17, 2020
Last update date Apr 14, 2021
Contact name Ankur Sharma
E-mail(s) sharmaa@gis.a-star.edu.sg
Phone +6586701153
Organization name Genome Institute Of Singapore
Lab Cancer Therapeutics and Stratified Oncology 5
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
State/province Singapore
ZIP/Postal code 138672
Country Singapore
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL29053 Multiplex spatial transcriptomics assay (Nanostring, human)
Samples (186)
GSM4735096 Hepatocellular Carcinoma sample MUX6188
GSM4735097 Hepatocellular Carcinoma sample MUX6189
GSM4735098 Hepatocellular Carcinoma sample MUX6190
This SuperSeries is composed of the following SubSeries:
GSE156625 Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (scRNA-seq)
GSE156626 Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (Nanostring)
Relations
BioProject PRJNA658535

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156337_Supplementary_Tables.xlsx 45.0 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
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