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Series GSE156008 Query DataSets for GSE156008
Status Public on Aug 17, 2020
Title Fatty acid metabolism mediates venetoclax resistance in acute myeloid leukemia stem cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The combination of venetoclax with azacitidine (ven/aza) has recently emerged as a promising regimen for acute myeloid leukemia (AML), with approximately 70% of newly diagnosed patients achieving complete remission (CR). However, 30% of newly diagnosed and nearly all relapsed patients do not achieve CR with ven/aza. Mechanistically, we previously reported that ven/aza efficacy is based on eradication of AML stem cells through a mechanism involving inhibition of amino acid metabolism, a process which is required in primitive AML cells to drive oxidative phosphorylation. In the present study we demonstrate that resistance to ven/aza occurs as a consequence of up-regulated fatty acid oxidation (FAO), which occurs either as an intrinsic property of RAS pathway mutations, or as a compensatory adaptation in relapsed disease. Utilization of FAO obviates the need for amino acid metabolism into the TCA cycle, thereby rendering ven/aza ineffective. Importantly, we show that pharmacological inhibition of FAO via use of MCL-1 or CPT1 inhibitor drugs restores targeting of ven/aza resistant AML stem cells. Based on these findings we propose that inhibition of FAO is a potential therapeutic strategy to address ven/aza resistance.
 
Overall design RNA was isolated from freshly sorted primary AML cells and subjected to RNA-seq analysis.
Web link https://doi.org/10.1038/s43018-020-00126-z
 
Contributor(s) Stevens B, Becker M, Pei S, Jordan CT
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Submission date Aug 10, 2020
Last update date Feb 24, 2021
Contact name Brett Stevens
E-mail(s) brett.stevens@ucdenver.edu
Phone 3037248231
Organization name University of Colorado
Lab Jordan Lab
Street address 12700 E 19th Avenue, Rm 10440C
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (24)
GSM4718903 07_AML_Pt04_32_neg_38_neg_Dx_LSC
GSM4718904 08_AML_Pt04_32_neg_38_pos_Dx_LSC
GSM4718905 15_AML_Pt88_32_neg_38_pos_Dx_LSC
Relations
BioProject PRJNA656302
SRA SRP276958

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156008_MB_RNAseq_geo.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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