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Series GSE155555 Query DataSets for GSE155555
Status Public on Mar 01, 2021
Title Genome-wide enhancer maps link disease variants to genes and cell types
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We generated ATAC-seq and H3K27ac ChIP-seq data in immortalized immune cancer cell lines to predict enhancer-gene regulation using the ABC model.
 
Overall design We generated ATAC-seq and H3K27ac ChIP-seq data in immortalized immune cancer cell lines to predict enhancer-gene regulation using the ABC model.
 
Contributor(s) Nasser J, Nguyen T, Ray J, Epstein C, Hacohen N, Lander E, Engreitz J
Citation(s) 33828297
Submission date Aug 03, 2020
Last update date May 31, 2021
Contact name Jesse Engreitz
E-mail(s) engreitz@stanford.edu
Organization name Stanford University
Department Genetics
Lab Engreitz Lab
Street address 450 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (67)
GSM4706074 BJAB-ctrl-1_H3K27ac
GSM4706075 BJAB-ctrl-2_H3K27ac
GSM4706076 BJAB_ctrl_1-Tag-30_ATAC
Relations
BioProject PRJNA650287
SRA SRP275565

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE155555_RAW.tar 13.6 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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