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Series GSE155346 Query DataSets for GSE155346
Status Public on Jul 07, 2021
Title Ketogenesis restrains aging-induced exacerbation of COVID in a mouse model (bulk RNA-seq)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Impaired immunometabolic response in the elderly regulates inflammation-driven COVID-19 severity which confers the greatest risk of mortality. To investigate how aging compromises defense against COVID-19, we developed a model of natural murine beta coronavirus (mCoV) infection with mouse hepatitis virus strain A59 (mCoV-A59) that recapitulated majority of hallmarks of COVID-19. Aged mCoV-A59-infected mice have increased mortality and higher systemic inflammation in the heart, adipose tissue and hypothalamus, including neutrophilia and loss of γδ T cells in lungs. Ketogenic diet increases beta-hydroxybutyrate, expands tissue protective γδ T cells, deactivates the inflammasome and decreases pathogenic monocytes in lungs during aging. These data underscore the value of mCoV-A59 model to test mechanism and establishes harnessing of ketogenic immunometabolic checkpoint as potential treatment against COVID-19 in the elderly.
 
Overall design Aged mice (20-21 months old) were fed a KD or chow diet for 5 days and then intranasally infected with mCoV-A59. gdT cells were sorted from lungs.
 
Contributor(s) Ryu S, Shchukina I, Youm Y, Qing H, Hilliard B, Dlugos T, Zhang X, Yasumoto Y, Booth C, Fernández-Hernando C, Suárez Y, Khanna KM, Horvath TL, Dietrich MO, Artyomov MN, Wang A, Deep Dixit V
Citation(s) 34151773
Submission date Jul 29, 2020
Last update date Jul 07, 2021
Contact name Maxim Artyomov
E-mail(s) martyomov@email.wustl.edu
Organization name Washington University in St. Louis
Department Pathology and Immunology
Lab Artyomov Lab
Street address 425 S Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM4699564 T-4: lung gdT keto bulkRNA-seq
GSM4699565 T-5: lung gdT keto bulkRNA-seq
GSM4699566 T-6: lung gdT keto bulkRNA-seq
This SubSeries is part of SuperSeries:
GSE155348 Ketogenesis restrains aging-induced exacerbation of COVID in a mouse model
Relations
BioProject PRJNA649447
SRA SRP274103

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE155346_counts_lung_gdT.xlsx 2.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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