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Series GSE154391 Query DataSets for GSE154391
Status Public on Jun 15, 2023
Title Symmetric inheritance of parental histones governs epigenome maintenance and stem cell identity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary Modified parental histones are segregated symmetrically to daughter DNA strands during replication and inherited through mitosis. How this may sustain the epigenome and cell identity remains unknown. Here, we show that transmission of histone-based information during replication maintains epigenome fidelity and embryonic stem cell plasticity. Asymmetric segregation of parental histones H3-H4 in MCM2-2A mutants compromised mitotic inheritance of histone modifications and globally altered the epigenome. This included widespread spurious deposition of repressive modifications, suggesting elevated epigenetic noise. Moreover, H3K9me3 loss at repeats caused de-repression and H3K27me3 redistribution across bivalent promoters correlated with misexpression of developmental genes. MCM2-2A mutation challenged dynamic transitions in cellular states across the cell cycle, enhancing naïve pluripotency and reducing lineage priming in G1. Further, developmental competence was diminished, correlating with impaired exit from pluripotency. Collectively, this argues that epigenetic inheritance of histone modifications maintains a correctly balanced and dynamic chromatin landscape able to support mammalian differentiation.
 
Overall design This SuperSeries is composed of the SubSeries listed below. Refer to individual Series.
 
Citation(s) 37666988
Submission date Jul 14, 2020
Last update date Sep 14, 2023
Contact name Anja Groth
E-mail(s) anja.groth@cpr.ku.dk
Organization name Novo Nordisk Foundation Center for Protein Research
Street address Blegdamsvej 3B
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (3)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (388)
GSM4670037 ChIP_410_H3K27me3_r1
GSM4670039 ChIP_421_H3K27me3_r1
GSM4670040 ChIP_439_H3K27me3_r1
This SuperSeries is composed of the following SubSeries:
GSE154379 Symmetric inheritance of parental histones governs epigenome maintenance and stem cell identity [ChIP-seq]
GSE154380 Symmetric inheritance of parental histones governs epigenome maintenance and stem cell identity [SCAR-seq]
GSE154390 Symmetric inheritance of parental histones governs epigenome maintenance and stem cell identity [RNA-seq]
Relations
BioProject PRJNA646113

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154391_RAW.tar 3.2 Gb (http)(custom) TAR (of BW, LOOM, MTX, TSV)
SRA Run SelectorHelp

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