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Series GSE154019 Query DataSets for GSE154019
Status Public on Dec 07, 2021
Title RNA Sequencing reveals induction of specific renal inflammatory pathways in a rat model of malignant hypertension
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary In malignant hypertension, far more severe kidney injury occurs than in the “benign” form of the disease. The role of high blood pressure and the renin-angiotensin-aldosterone system are well recognized, but the development of malignant nephrosclerosis remains incompletely understood. Using the rat model of two-kidney, one-clip renovascular hypertension in which some but not all animals develop malignant nephrosclerosis, we performed an unbiased analysis of genes by RNA-sequencing to identify transcriptional changes in the kidney specific for malignant nephrosclerosis. Differential gene expression was assessed in three groups: malignant hypertension (MH), non-malignant hypertension (NMH) and normotensive, sham operated controls (sham). To distinguish MH from NMH, we considered two factors: weight loss and typical renovascular lesions. Mean blood pressure measured intraarterially was elevated to a similar degree in MH (220.0±6.5 mmHg) and NMH (192.0±6.4 mmHg) compared to controls (119.5±1.7 mmHg, p<0.05). 886 genes were exclusively regulated in MH only. Principal component analysis revealed a separated clustering of the three groups. The data pointed to an upregulation of many inflammatory mechanisms in MH including pathways, which did previously attract relatively little attention in the setting of hypertensive nephrosclerosis: Transcripts from all three complement activation pathways were upregulated in MH compared to NMH but not in NMH compared with controls; immunohistochemistry confirmed complement deposition in MH exclusively. The expression of chemokines attracting neutrophil granulocytes (CXCL6) as well as actual granulocyte infiltration were increased only in MH rats. The data suggest that these pathways may contribute to the most severe forms of hypertensive nephrosclerosis.
 
Overall design Analysis of gene expression in the kidney in a animal model of renovascular hypertension elucidating the pathogenic background of malignant hypertension using RNA-Seq
 
Contributor(s) Hilgers KF, Menendez-Castro C, Kirchner P, Ekici AB
Citation(s) 34528115
Submission date Jul 08, 2020
Last update date Dec 07, 2021
Contact name Philipp Kirchner
Organization name University of Bern
Department Pathology
Street address Murtenstrasse 31
City Bern
ZIP/Postal code 3008
Country Switzerland
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (16)
GSM4661866 kidney_control_127
GSM4661867 kidney_control_128
GSM4661868 kidney_control_134
Relations
BioProject PRJNA644873
SRA SRP270916

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154019_subread_featureCount_matrix.txt.gz 2.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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