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GEO accession:
Series GSE153403
Query DataSets for GSE153403
Status
Public on Jul 06, 2020
Title
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
Organism
Mus musculus
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34002095
Submission date
Jun 27, 2020
Last update date
Feb 23, 2022
Contact name
Bing Ren
Organization name
University of California, San Diego School of Medicine
Street address
9500 Gilman Dr., CMM-East, Admin Area/Rm 2071
City
La Jolla
State/province
CA
ZIP/Postal code
92093
Country
USA
Platforms (4)
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GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (88)
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GSM4643756
Syn1-6_RAD21_rep1
GSM4643757
Syn1-6_RAD21_rep2
GSM4643758
Syn1-6_CTCF_rep1
GSM4643759
Syn1-6_CTCF_rep2
GSM4643760
Syn1-6_Input_rep1
GSM4643761
Syn1-6_Input_rep2
GSM4643762
WT_H3K4me3_rep2
GSM4643763
WT_H3K4me3_rep1
GSM4643764
WT_RAD21_rep1
GSM4643765
WT_RAD21_rep2
GSM4643766
WT_H3K27ac_rep2
GSM4643767
WT_H3K27ac_rep1
GSM4643768
WT_CTCF_rep2
GSM4643769
WT_CTCF_rep1
GSM4643770
4CBS_RAD21_rep1
GSM4643771
4CBS_RAD21_rep2
GSM4643772
4CBS_H3K27ac_rep2
GSM4643773
4CBS_H3K27ac_rep1
GSM4643774
4CBS_H3K4me3_rep2
GSM4643775
4CBS_H3K4me3_rep1
GSM4643776
4CBS_CTCF_rep1
GSM4643777
4CBS_CTCF_rep2
GSM4643778
WT_Input_rep1
GSM4643779
WT_Input_rep2
GSM4643780
4CBS_Input_rep1
GSM4643781
4CBS_Input_rep2
GSM4643782
nbd_Syn-6_Input_rep1
GSM4643783
nbd_Syn-15_CTCF_rep1
GSM4643784
nbd_Syn-6_RAD21_rep2
GSM4643785
nbd_Syn-6_CTCF_rep1
GSM4643786
nbd_Syn-6_CTCF_rep2
GSM4643787
nbd_Syn-15_CTCF_rep2
GSM4643788
nbd_Syn-6_RAD21_rep1
GSM4643789
nbd_Syn-15_RAD21_rep1
GSM4643790
nbd_Syn-15_Input_rep1
GSM4643791
nbd_Syn-6_Input_rep2
GSM4643792
nbd_Syn-15_RAD21_rep2
GSM4643793
nbd_Syn-15_Input_rep2
GSM4643804
WT_PLAC-seq_rep1
GSM4643805
4CBS_PLAC-seq_rep1
GSM4643806
2CBS_PLAC-seq_rep1
GSM4643807
4CBS_downstream_PLAC-seq_rep1
GSM4643808
2CBS_downstream_PLAC-seq_rep1
GSM4643809
4CBS_downstream_PLAC-seq_rep2
GSM4643810
4CBS_PLAC-seq_rep2
GSM4643811
2CBS_PLAC-seq_rep2
GSM4643812
WT_PLAC-seq_rep2
GSM4643813
2CBS_downstream_PLAC-seq_rep2
GSM4643814
2CBS_HiC_rep1
GSM4643815
2CBS_HiC_rep2
GSM4643816
4CBS_HiC_rep1
GSM4643817
4CBS_HiC_rep2
GSM4932871
Syn1-6_scramble_CTCF_rep1
GSM4932872
Syn1-6_scramble_CTCF_rep2
GSM4932873
Syn1-6_scramble_Rad21_rep1
GSM4932874
Syn1-6_scramble_Rad21_rep2
GSM4932875
nBd_Syn1-6_scramble_CTCF_rep1
GSM4932876
nBd_Syn1-6_scramble_CTCF_rep2
GSM4932877
nBd_Syn1-6_scramble_Rad21_rep1
GSM4932878
nBd_Syn1-6_scramble_Rad21_rep2
GSM4932879
Syn1-6_swap_CTCF_rep1
GSM4932880
Syn1-6_swap_CTCF_rep2
GSM4932881
Syn1-6_swap_Rad21_rep1
GSM4932882
Syn1-6_swap_Rad21_rep2
GSM4932883
nBd_Syn1-6_swap_CTCF_rep1
GSM4932884
nBd_Syn1-6_swap_CTCF_rep2
GSM4932885
nBd_Syn1-6_swap_Rad21_rep1
GSM4932886
nBd_Syn1-6_swap_Rad21_rep2
GSM4932887
Syn1-6_10bp-adj_CTCF_rep1
GSM4932888
Syn1-6_10bp-adj_CTCF_rep2
GSM4932889
Syn1-6_10bp-adj_Rad21_rep1
GSM4932890
Syn1-6_10bp-adj_Rad21_rep2
GSM4932891
Syn1-6_CTCF_rep3
GSM4932892
Syn1-6_CTCF_rep4
GSM4932893
Syn1-6_Rad21_rep3
GSM4932894
ΔZF9-11_Syn1-6_CTCF_rep1
GSM4932895
ΔZF9-11_Syn1-6_CTCF_rep2
GSM4932896
ΔZF9-11_Syn1-6_Rad21_rep1
GSM4932897
ΔZF9-11_Syn1-6_Rad21_rep2
GSM4932898
WT_CTCF_rep3
GSM4932899
WT_Rad21_rep3
GSM4933180
WT_rep1
GSM4933181
WT_rep2
GSM4933182
4CBS_rep1
GSM4933183
4CBS_rep2
GSM4933184
4CBS_rep3
GSM4933185
4CBS_downstream_rep1
GSM4933186
4CBS_downstream_rep2
This SuperSeries is composed of the following SubSeries:
GSE153400
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [ChIP-seq]
GSE153402
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]
GSE162101
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [RNA-seq]
Relations
BioProject
PRJNA642301
Download family
Format
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE153403_RAW.tar
22.8 Gb
(http)
(custom)
TAR (of BW, HIC, TXT)
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