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| Status |
Public on Jun 26, 2020 |
| Title |
Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes |
| Organism |
Triticum aestivum |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We have a limited understanding of how the complexity of the wheat genome influences the distribution of chromatin states along the homoeologous chromosomes. Using a differential nuclease sensitivity (DNS) assay, we investigated the chromatin states in the coding and transposon element (TE) -rich repetitive regions of the allopolyploid wheat genome.
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| Overall design |
The raw data was deposited in BioProject: PRJNA564769, including SRR10098334, SRR10098333, SRR10098332, and SRR10098331.
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| Contributor(s) |
Akhunov E, Jordan KW, He F, Fernandez de Soto M, Akhunova A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA564769 |
| |
| Submission date |
Jun 25, 2020 |
| Last update date |
Jun 26, 2020 |
| Contact name |
Eduard Akhunov |
| E-mail(s) |
eakhunov@ksu.edu
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| Phone |
+1-785-532-1342
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| Organization name |
Kansas State University
|
| Department |
Plant Pathology
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| Lab |
Akhunov Lab
|
| Street address |
1712 Claflin Road
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| City |
Manhattan |
| State/province |
Kansas |
| ZIP/Postal code |
66503 |
| Country |
USA |
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| Platforms (1) |
| GPL18862 |
Illumina HiSeq 2500 (Triticum aestivum) |
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| Samples (4)
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| GSM4639858 |
2 week leaf tissue digested with 10U/ml MNase, biological replicate 1 |
| GSM4639859 |
2 week leaf tissue digested with 100U/ml MNase, biological replicate 1 |
| GSM4639860 |
2 week leaf tissue digested with 10U/ml MNase, biological replicate 2 |
| GSM4639861 |
2 week leaf tissue digested with 100U/ml MNase, biological replicate 2 |
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| Relations |
| SRA |
SRP221344 |
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