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Series GSE153186 Query DataSets for GSE153186
Status Public on Dec 22, 2020
Title Gene expression change of MDCK cells expressing scribble shRNA in a tetracycline-inducible manner (scribKD cells)
Organism Canis lupus familiaris
Experiment type Expression profiling by array
Summary Cell competition is a social cellular phenomenon in which unfit cells are selectively eliminated by wild-type (WT) cells. Although recent studies show that mechanical forces induce competitive cell-cell interactions, it remains largely unknown how unfit cells are sensed and mechanically eliminated. Here, we report that MDCK cells depleted of the polarity gene scribble (scribKD cells) secrete FGF21 to drive cell competition. Knockdown of FGF21 in scribKD cells or loss of FGFR1 in WT cells increases the survival rate of scribKD cells in cell competition, suggesting that WT cells recognize scribKD cells through FGF21. Moreover, FGF21 promotes the compression and elimination of scribKD cells by attracting surrounding WT cells. We also demonstrate that activation of the ASK1-p38 pathway in scribKD cells induces FGF21 to drive cell competition. Our findings reveal a mechanism whereby WT cells mechanically eliminate scribKD cells and propose a new function for FGF21 in cell-cell communication.
We performed DNA microarray analysis to search for the genes responsible for cell competition.
 
Overall design mRNA of scribKD cells were extracted at 30, 45 and 60 hours after treatment with or without tetracycline (Tet).
 
Contributor(s) Kawarazaki Y, Ichijo H
Citation(s) 33357449
Submission date Jun 24, 2020
Last update date Dec 30, 2020
Contact name Motoyuki Ogawa
Organization name The University of Tokyo
Department Graduate School of Pharmaceutical Sciences
Lab Cell Signaling
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-0033
Country Japan
 
Platforms (1)
GPL13605 Agilent-021193 Canine (V2) Gene Expression Microarray (Feature Number version)
Samples (6)
GSM4635322 scribKD_Tet(–)_30hr
GSM4635323 scribKD_Tet(+)_30hr
GSM4635324 scribKD_Tet(–)_45hr
Relations
BioProject PRJNA641688

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153186_RAW.tar 12.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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