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| Status |
Public on Oct 12, 2020 |
| Title |
Combinatorial transcriptional profiling of mouse and human enteric neurons identifies shared and disparate subtypes in situ [Mouse nuclei bulk RNA-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The data provided here were used to generate a comprehensive transcriptome atlas for the enteric neurons and glia of adult mice.
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| Overall design |
Myenteric neurons and glia were isolated from the duodenum, ileum, and colon of adult Phox2b-CFP mice (P42-52) using FACS. Nuclei were subjected to bulk RNA-Seq and differential Expression analysis was performed between enteric neurons and glia as well as those derived from different gut segments in order to identify neuron-specific genes in each gut region
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| Contributor(s) |
May-Zhang A, Southard-Smith ME |
| Citation(s) |
33010250 |
| |
| Submission date |
Jun 24, 2020 |
| Last update date |
Oct 12, 2020 |
| Contact name |
E Michelle Southard-Smith |
| E-mail(s) |
michelle.southard-smith@vanderbilt.edu
|
| Phone |
615-293-4236
|
| Organization name |
Vanderbilt University Medical Center
|
| Department |
Medicine, Genetic Medicine
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| Street address |
2215 Garland Ave,
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (11)
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| This SubSeries is part of SuperSeries: |
| GSE153202 |
Combinatorial transcriptional profiling of mouse and human enteric neurons identifies shared and disparate subtypes in situ |
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| Relations |
| BioProject |
PRJNA641568 |
| SRA |
SRP268589 |
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