|
| Status |
Public on Feb 08, 2021 |
| Title |
Identification of TFAP2A and MITF binding sites in the melanoma cell line SK-MEL-28 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
TFAP2A and MITF binding sites were identified in SK-MEL-28 cell lines using Cleavage Under Targets and Release Using Nuclease (CUT&RUN).
|
| |
|
| Overall design |
We targeted TFAP2A and MITF by CUT&RUN sequencing in wild-type SK-MEL-28 cell lines. All experiments were conducted in duplicate. IgG was used as a background control.
|
| |
|
| Contributor(s) |
Kenny C, Cornell RA |
| Citation(s) |
33438577, 34140478, 35580127 |
|
https://doi.org/10.1101/2021.11.23.469757
|
| |
| Submission date |
Jun 23, 2020 |
| Last update date |
May 23, 2022 |
| Contact name |
Colin Kenny |
| E-mail(s) |
colin-kenny@uiowa.edu
|
| Organization name |
University of Iowa
|
| Department |
Anatomy and Cell Biology
|
| Lab |
Cornell lab
|
| Street address |
51 Newton Road 100 Bowen Science Building Iowa
|
| City |
Iowa City |
| State/province |
Iowa |
| ZIP/Postal code |
52242 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA641275 |
| SRA |
SRP268414 |
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