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Series GSE152964 Query DataSets for GSE152964
Status Public on Jul 01, 2021
Title Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella variicola AJ055
Organism Klebsiella variicola
Experiment type Expression profiling by high throughput sequencing
Summary The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. The pathogens included in this initiative are: Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pyogenes, and Streptococcus pneumoniae. This submission pertains to strain AJ055.
 
Overall design 12 samples, 2 conditions, 6 biological replicates per condition.
contributor: Bioplatforms Australia Antibiotic Resistant Sepsis Pathogens Framework Initiative
 
Citation(s) 36934086
Submission date Jun 22, 2020
Last update date Apr 25, 2023
Contact name Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia
E-mail(s) mlum@bioplatforms.com
Organization name Bioplatforms Australia
Department https://bioplatforms.com/
Lab https://bioplatforms.com/projects/antibiotic-resistant-pathogens/
Street address Level 4, Building 4WW, Research Park Drive, Macquarie University
City Sydney
State/province NSW
ZIP/Postal code 2019
Country Australia
 
Platforms (1)
GPL28719 Illumina HiSeq 2500 (Klebsiella variicola)
Samples (12)
GSM4630641 RPMI_51449
GSM4630642 RPMI_51450
GSM4630643 RPMI_51451
This SubSeries is part of SuperSeries:
GSE152848 Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative
Relations
BioProject PRJNA641084
SRA SRP268289

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152964_GCF_900622585.1_AJ055_genomic.gff.gz 365.8 Kb (ftp)(http) GFF
GSE152964_GCF_900622585.1_AJ055_genomic.gtf.gz 101.8 Kb (ftp)(http) GTF
GSE152964_gene_counts.txt.gz 154.1 Kb (ftp)(http) TXT
GSE152964_gene_cpmlog2.txt.gz 529.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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