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Series GSE152724 Query DataSets for GSE152724
Status Public on Jun 18, 2020
Title Expression profiling by RNA-Seq of 3T3 mouse pre-adipocyte cells after treatment with Indoxyl Sulphate or Oxidative LDL, with or without pNaKtide
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed expression profiling by RNA-Seq on 3T3 mouse pre-adipocyte cells. Cells were divided into six groups of five replicates each and were treated with either control (DMSO), Indoxyl Sulphate, or Oxidative LDL, either with or without pNaKtide (NaK).
Overall design RNA was extracted from cells in each group, and sequenced in a 2x50 base-pair design on an Illumina 1500 sequencer.
Contributor(s) Sodhi K, Fan J, Denvir J, Liu J, Juan S, Yiliang C, Roy S, Xie Z, Abraham NG, Shapiro JI
Citation(s) 32824688
Submission date Jun 17, 2020
Last update date Sep 08, 2020
Contact name James Denvir
Organization name Marshall University School of Medicine
Department Biochemistry and Microbiology
Lab Genomics and Bioinformatics Core Facility
Street address One John Marshall Drive
City Huntington
State/province WV
ZIP/Postal code 25755
Country USA
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (30)
GSM4625084 Control-1
GSM4625085 Control-2
GSM4625086 Control-3
This SubSeries is part of SuperSeries:
GSE152725 Oxidant Alterations in Adipocyte mRNA Expression: Role of the Na,K-ATPase Oxidant Amplification Loop
BioProject PRJNA640220
SRA SRP267762

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152724_fpkm.csv.gz 5.0 Mb (ftp)(http) CSV
GSE152724_normalized_counts.csv.gz 4.0 Mb (ftp)(http) CSV
GSE152724_raw_counts.csv.gz 1.0 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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