|
| Status |
Public on Jun 16, 2020 |
| Title |
Interactive analysis of single-cell epigenomic landscapes with ChromSCape |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Here, we present ChromSCape, a user-friendly interactive Shiny/R application that processes single-cell epigenomic data to help the biological interpretation of chromatin landscapes within cell populations. ChromSCape successfully analyses the distribution of repressive and active histone modifications as well as chromatin accessibility landscapes from single-cell datasets.
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| |
|
| Overall design |
H3K27me3 single-cell ChIP-seq
|
| |
|
| Contributor(s) |
Prompsy P, Vallot C |
| Citation(s) |
33177523 |
| |
| Submission date |
Jun 15, 2020 |
| Last update date |
Nov 24, 2020 |
| Contact name |
Céline Vallot |
| E-mail(s) |
celine.vallot@curie.fr
|
| Phone |
0156246340
|
| Organization name |
Institut Curie
|
| Street address |
26 Rue D'Ulm
|
| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (2) |
|
| Relations |
| BioProject |
PRJNA639548 |
| SRA |
SRP267381 |
