|
| Status |
Public on Feb 21, 2021 |
| Title |
Single Cell Transcriptional and Chromatin Accessibility Profiling on the human adult kidneys |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed single nucleus ATAC (snATAC-seq) and RNA (snRNA-seq) sequencing to generate paired, cell-type-specific chromatin accessibility and transcriptional profiles of the adult human kidney. snRNA-seq on 3 samples (Healthy1/2/3) were already done and deposited on GSE131882 as control1/2/3 (GSM3823939/GSM3823940/3823941, respectively)
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| |
|
| Overall design |
n=5 human adult kidney cortex samples were analyzed with snRNA-seq and snATAC-seq (10xGenomics platform). snRNA-seq sequencing of 3 samples (Healthy1/2/3) were already done and deposited on GSE131882 as control1/2/3
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| |
|
| Contributor(s) |
Muto Y, Wilson PC, Humphreys BD |
| Citation(s) |
33850129, 36310237 |
| |
| Submission date |
May 27, 2020 |
| Last update date |
Nov 16, 2022 |
| Contact name |
Yoshiharu Muto |
| E-mail(s) |
y.muto@wustl.edu
|
| Organization name |
Washington University in St. Louis
|
| Department |
Medicine / Nephrology
|
| Lab |
Benjamin Humphreys Lab
|
| Street address |
660. S Euclid Ave., CB 8118
|
| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (10)
|
|
| Relations |
| BioProject |
PRJNA635415 |
| SRA |
SRP264987 |
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