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Series GSE150392 Query DataSets for GSE150392
Status Public on Jun 19, 2020
Title RNA-Seq of Human iPSC-cardiomyocytes infected with SARS-CoV-2
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Coronavirus disease 2019 (COVID-19) is a viral pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). COVID-19 is predominantly defined by respiratory symptoms, but cardiac complications including arrhythmias, heart failure, and viral myocarditis are also prevalent. Although the systemic ischemic and inflammatory responses caused by COVID-19 can detrimentally affect cardiac function, the direct impact of SARS-CoV-2 infection on human cardiomyocytes is not well understood.
 
Overall design We used human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) as a model system to examine the mechanisms of cardiomyocyte-specific infection by SARS-CoV-2. These studies show that SARS-CoV-2 can infect hiPSC-CMs in vitro, establishing a model for elucidating the mechanisms of infection and potentially a cardiac-specific antiviral drug screening platform.
 
Contributor(s) Sharma A, Svendsen C
Citation(s) 32835305, 33805011
Submission date May 12, 2020
Last update date Oct 11, 2021
Contact name AGCT Core
Organization name Cedars Sinai Medical Center
Department BMS
Street address 8687 Melrose Ave, PDC B230
City West Hollywood
State/province CA
ZIP/Postal code 90069
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM4548303 SARS-CoV-2 Infected hiPSC-CMs (rep 1)
GSM4548304 SARS-CoV-2 Infected hiPSC-CMs (rep 2)
GSM4548305 SARS-CoV-2 Infected hiPSC-CMs (rep 3)
Relations
BioProject PRJNA631969
SRA SRP261295

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE150392_Cov_Mock_Raw_COUNTS.csv.gz 580.6 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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