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| Status |
Public on Nov 17, 2020 |
| Title |
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence |
| Organism |
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Our study highlights the power of interpreting available “omics” datasets with a focus on small proteins, and may serve as a blueprint for a data integration-based survey of small proteins in diverse bacteria.
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| Overall design |
Ribosome profiling analysis of the Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 translatome paired with transcriptome sequencing
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| Contributor(s) |
Venturini E, Vogel J, Svensson SL, Sharma CM |
| Citation(s) |
37223003 |
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Elisa Venturini, Sarah L Svensson, Sandra Maaß, Rick Gelhausen, Florian Eggenhofer, Lei Li, Amy K Cain, Julian Parkhill, Dörte Becher, Rolf Backofen, Lars Barquist, Cynthia M Sharma, Alexander J Westermann, and Jörg Vogel. A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence. microLife, Volume 1, Issue 1, July 2020, uqaa002, doi:10.1093/femsml/uqaa002
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| Submission date |
May 05, 2020 |
| Last update date |
Aug 11, 2023 |
| Contact name |
Florian Eggenhofer |
| Organization name |
University of Freiburg
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| Department |
Institute for Informatics
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| Lab |
Chair for Bioinformatics
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| Street address |
Georges Köhler Allee 106
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| City |
Freiburg |
| ZIP/Postal code |
79110 |
| Country |
Germany |
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| Platforms (1) |
| GPL20056 |
Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA630441 |
| SRA |
SRP260090 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE149893_RAW.tar |
59.7 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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