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Series GSE148233 Query DataSets for GSE148233
Status Public on Apr 07, 2021
Title Macrophages in Crohn’s disease creeping fat are predominantly inflammatory and produce calprotectin
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Crohn’s disease is characterized by transmural inflammation and therefore the mesenteric immune compartment has gained interest. However, its significance in Crohn’s disease is largely unclear. Macrophages are plastic cells that adapt their phenotype to environmental stimuli resulting in inflammatory and regulatory macrophage subsets. Hence, their distribution can reflect the overall nature of an immune infiltrate. We show that mesenteric macrophages contain two populations, characterized as CD11b-high and CD11b-dim. The CD11b-dim population is characterized by expression of regulatory markers CD206, CD200R, CD163, PD-L2, CD32. CD11b-high macrophages display an IFNγ induced signature and produce high levels of calprotectin. CD11b-dim and CD11b-high populations were comparable between Crohn’s disease and other indications in expression pattern, but the CD11b-high population was strongly overrepresented in this patient group.
 
Overall design CD11b-high macrophages were isolated from the mesentery of patients undergoing bowel resection (n=12). CD11b-low macrophages were isolated from the same patients (n=10, remaining patients did not yield sufficient number of cells).
 
Contributor(s) Wildenberg ME, Bloemendaal FM
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Submission date Apr 07, 2020
Last update date Apr 10, 2021
Contact name Manon Wildenberg
E-mail(s) m.e.wildenberg@amc.nl
Organization name Amsterdam UMC
Department Gastroenterology
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105AZ
Country Netherlands
 
Platforms (1)
GPL24324 [Clariom_S_Human_HT] Affymetrix Clariom S Assay HT, Human (Includes Pico Assay)
Samples (22)
GSM4456468 NonCD1_Dim
GSM4456469 NonCD1_High
GSM4456470 CD1_High
Relations
BioProject PRJNA623563

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148233_RAW.tar 24.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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