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Series GSE147209 Query DataSets for GSE147209
Status Public on Jun 07, 2021
Title T cell maturation, selection, and function differentially depend on the chaperonin CCT
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary T cell homeostasis rely on de-novo transcription of proteins to ensure antigen-specific immunity. Central in this process and to ensure efficient and correct protein folding and turn-over is the Eukaryotic Type II chaperons, which primary targets are actin and tubulin. So far its role in T cell development and function remain unclear. Using a conditional deletion of a subunit within the type II chaperon complex we show this complex to be indispensable for correct maturation of thymocytes, with a reduced thymic output of mature effector and regulatory T cells. Accordingly, we found the formation of nuclear actin filaments to be reduced resulting in an array of functional effects with the most prominent being the failure to commit to the Th2 cell linage with a further insufficiency in recruiting cellular and humoral effector mechanisms to command an effective anti-parasitic response. Hence, our results highlight the importance of the Eukaryotic Type II chaperons in shaping the fate and function of CD4 T cells.
 
Overall design RNA-seq in wild-type and Cct8 KO in lymphocytes
 
Contributor(s) Handel AE, Oftedal BE, Hollander GA
Citation(s) 34083746
Submission date Mar 19, 2020
Last update date Jun 07, 2021
Contact name Adam Handel
E-mail(s) adam.handel@ndcn.ox.ac.uk
Organization name University of Oxford
Department Weatherall Institute of Molecular Medicine
Street address John Radcliffe Hospital
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (12)
GSM4420348 KO1_0h
GSM4420349 KO2_0h
GSM4420350 KO3_0h
Relations
BioProject PRJNA613424
SRA SRP253322

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147209_CCT8_lymphocytes_unadj.counts.txt.gz 393.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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