 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 01, 2020 |
| Title |
Transcription of photosynthetic genes in AAP5 during growth on solid and liquid media |
| Organism |
Sphingomonas sp. AAP5 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Comparison of cells grown for 4 and 8 days on agar plates with cells from liquid cultures after reaching their maximum optical density.
|
| |
|
| Overall design |
Cells were incubated aerobically either in liquid medium or on agar plates under 12-h dark/12-h light regime and harvested 4 hours after the transition to dark.
|
| |
|
| Contributor(s) |
Kopejtka K, Tomasch J, Zeng Y, Selyanin V, Dachev M, Piwosz K, Tichý M, Bunk B, Brinkmann H, Gardian Z, Geffers R, Reck M, Sommaruga R, Koblížek M |
| Citation(s) |
33361324 |
| |
| Submission date |
Mar 16, 2020 |
| Last update date |
Jan 04, 2021 |
| Contact name |
Karel Vaclav Kopejtka |
| E-mail(s) |
kopejk00@alga.cz
|
| Phone |
+420777623254
|
| Organization name |
Institute of Microbiology Czech Acad. Sci.
|
| Department |
Centre Algatech
|
| Lab |
Laboratory of Anoxygenic Phototrophs
|
| Street address |
Novohradska
|
| City |
Trebon |
| ZIP/Postal code |
37981 |
| Country |
Czech Republic |
| |
|
| Platforms (1) |
| GPL28277 |
Illumina HiSeq 2500 (Sphingomonas sp. AAP5) |
|
| Samples (9)
|
| GSM4413684 |
AAP5, early plate, day 4, Replicate 1 |
| GSM4413685 |
AAP5, early plate, day 4, Replicate 2 |
| GSM4413686 |
AAP5, early plate, day 4, Replicate 3 |
| GSM4413687 |
AAP5, late plate, day 8, Replicate 1 |
| GSM4413688 |
AAP5, late plate, day 8, Replicate 2 |
| GSM4413689 |
AAP5, late plate, day 8, Replicate 3 |
|
| This SubSeries is part of SuperSeries: |
| GSE147102 |
Simultaneus presence of bacteriochlorophyll and xanthorhodopsin genes in freshwater bacterium Sphingomonas sp. AAP5 |
|
| Relations |
| BioProject |
PRJNA612850 |
| SRA |
SRP252972 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE147049_RAW.tar |
560.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...