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Series GSE146592 Query DataSets for GSE146592
Status Public on Mar 14, 2021
Title Acute myeloid leukemia cells resist chemotherapy through a transient senescence-like state [PDX]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In acute myeloid leukemias (AML), chemotherapy is frequently followed by disease relapse, yet the mechanism by which AML reemerges is not fully understood. We hypothesized that chemotherapy induces senescence-like dormancy that facilitates survival to genotoxic exposure, allowing AML cells to endure treatment in a transiently dormant state while retaining potential for leukemic repopulation. Here, we show that primary AML cells exhibit hallmark senescence features following treatment with cytarabine (AraC), including growth arrest, increased cellular granularity, senescence-associated-β-galactosidase (SA-β-gal) activity, and senescence-associated transcriptomic alterations. Induction of AraC-induced premature senescence was regulated by the ATR kinase activity and mediated stress-survival. High-throughput single cell RNA (scRNA)-seq analysis of primary AML cells ex vivo and in vivo following chemotherapy suggest active transcriptional programming towards senescent-like dormancy instead of enrichment for leukemia stem cells (LSCs). scRNA-seq of sorted AraC-induced premature senescent AML cells demonstrated a heterogenous population including a fraction of cells with simultaneous expression of dormancy- and senescence-associated gene signatures. Xenotransplantation of AraC-induced premature senescent AML cells into mice demonstrated that senescent-like AML cells maintain leukemia-repopulating potential. Altogether, we propose a mechanism of AML relapse whereby AML cells tolerate chemotherapy via acquisition of a transient senescent-like state.
 
Overall design Gene expression in AraC treated AML ex vivo culture, primary xenografts
 
Contributor(s) Cihangir D, Teater M, Melnick AM
Citation(s) 33500244
Submission date Mar 06, 2020
Last update date Mar 14, 2021
Contact name Matt Teater
E-mail(s) mrt2001@med.cornell.edu
Organization name Weill Cornell Medical College
Street address 445 E 69th St
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (15)
GSM4396328 AML2837_at_day_0_sample_1
GSM4396329 AML2837_at_day_0_sample_2
GSM4396330 AML2837_at_day_0_sample_3
This SubSeries is part of SuperSeries:
GSE146544 Acute myeloid leukemia cells resist chemotherapy through a transient senescence-like state
Relations
BioProject PRJNA610898
SRA SRP251927

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE146592_RAW.tar 3.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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