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| Status |
Public on Mar 24, 2021 |
| Title |
Enhancers are Activated by p300/CBP Activity-Dependent PIC Assembly, RNAPII Recruitment and Pause Release [EU-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The metazoan-specific acetyltransferase p300/CBP is involved in activating signalinduced, enhancer-mediated transcription of cell-type-specific genes. However, the global kinetics and mechanisms of p300/CBP activity-dependent transcription activation remain poorly understood. We performed genome-wide, time-resolved analyses to show that enhancers and super-enhancers are dynamically activated through p300/CBP-catalyzed acetylation, deactivated by the opposing deacetylase activity, and kinetic acetylation directly contributes to maintaining cell identity at very rapid timescales. The acetyltransferase activity is dispensable for the recruitment of p300/CBP and transcription factors, but essential for promoting the recruitment of TFIID and RNAPII at virtually all enhancers and enhancer-regulated genes. This identifies pre-initiation complex assembly as a dynamically controlled step in the transcription cycle and reveals p300/CBP-catalyzed acetylation as the signal that specifically promotes transcription initiation at enhancer-regulated genes. We propose that p300/CBP activity uses a ‘recruit-and-release’ mechanism to simultaneously promote RNAPII recruitment and pause release, and thereby, enables kinetic activation of enhancer-mediated transcription.
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| Overall design |
EU-seq of mESC treated with JQ1 or A-485 and/or TSA.
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| Contributor(s) |
Narita T, Hamilton WB, Choudhary C |
| Citation(s) |
33765415 |
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| Submission date |
Mar 03, 2020 |
| Last update date |
Apr 01, 2021 |
| Contact name |
Chunarum Choudhary |
| E-mail(s) |
chuna.choudhary@cpr.ku.dk
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| Organization name |
University of Copenhagen
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| Department |
Novo Nordisk Foundation Center for Protein Research
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| Lab |
Choudhary Group
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| Street address |
Blegdamsvej 3B
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| City |
Copenhagen N |
| State/province |
--- Select a state --- |
| ZIP/Postal code |
2200 |
| Country |
Denmark |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (72)
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| GSM4378050 |
EU Seq of ESC. Experiment ID1, control, replicate1. |
| GSM4378051 |
EU Seq of ESC. Experiment ID1, control, replicate2. |
| GSM4378052 |
EU Seq of ESC. Experiment ID1, control, replicate3. |
| GSM4378053 |
EU Seq of ESC. Experiment ID1, 30min A-485 tx, replicate1. |
| GSM4378054 |
EU Seq of ESC. Experiment ID1, 30min A-485 tx, replicate2. |
| GSM4378055 |
EU Seq of ESC. Experiment ID1, 30min A-485 tx, replicate3. |
| GSM4378056 |
EU Seq of ESC. Experiment ID1, 60min A-485 tx, replicate1. |
| GSM4378057 |
EU Seq of ESC. Experiment ID1, 60min A-485 tx, replicate2. |
| GSM4378058 |
EU Seq of ESC. Experiment ID1, 60min A-485 tx, replicate3. |
| GSM4378059 |
EU Seq of ESC. Experiment ID1, 120min A-485 tx, replicate1. |
| GSM4378060 |
EU Seq of ESC. Experiment ID1, 120min A-485 tx, replicate2. |
| GSM4378061 |
EU Seq of ESC. Experiment ID1, 120min A-485 tx, replicate3. |
| GSM4378074 |
EU Seq of ESC. Experiment ID2, control, replicate1. |
| GSM4378075 |
EU Seq of ESC. Experiment ID2, control, replicate2. |
| GSM4378076 |
EU Seq of ESC. Experiment ID2, 30min A-485 tx, replicate1. |
| GSM4378077 |
EU Seq of ESC. Experiment ID2, 30min A-485 tx, replicate2. |
| GSM4378078 |
EU Seq of ESC. Experiment ID2, 60min A-485 tx, replicate1. |
| GSM4378079 |
EU Seq of ESC. Experiment ID2, 60min A-485 tx, replicate2. |
| GSM4378080 |
EU Seq of ESC. Experiment ID2, 120min A-485 tx, replicate1. |
| GSM4378081 |
EU Seq of ESC. Experiment ID2, 120min A-485 tx, replicate2. |
| GSM4378082 |
EU Seq of ESC. Experiment ID3, control, replicate1. |
| GSM4378083 |
EU Seq of ESC. Experiment ID3, 30min A-485 tx, replicate1. |
| GSM4378084 |
EU Seq of ESC. Experiment ID3, 60min A-485 tx, replicate1. |
| GSM4378085 |
EU Seq of ESC. Experiment ID3, 120min A-485 tx, replicate1. |
| GSM4378086 |
EU Seq of ESC. Experiment ID8, 20min A-485 tx, replicate1. |
| GSM4378087 |
EU Seq of ESC. Experiment ID8, 20min A-485 tx, replicate2. |
| GSM4378088 |
EU Seq of ESC. Experiment ID8, control, replicate1. |
| GSM4378089 |
EU Seq of ESC. Experiment ID8, control, replicate2. |
| GSM4378090 |
EU Seq of ESC. Experiment ID6, control, replicate1. |
| GSM4378091 |
EU Seq of ESC. Experiment ID3, 30min TSA tx, replicate1. |
| GSM4378092 |
EU Seq of ESC. Experiment ID6, 30min TSA tx, replicate1. |
| GSM4378093 |
EU Seq of ESC. Experiment ID3, 60min TSA tx, replicate1. |
| GSM4378094 |
EU Seq of ESC. Experiment ID6, 60min TSA tx, replicate1. |
| GSM4378095 |
EU Seq of ESC. Experiment ID3, 120min TSA tx, replicate1. |
| GSM4378096 |
EU Seq of ESC. Experiment ID6, 120min TSA tx, replicate1. |
| GSM4378105 |
EU Seq of ESC. Experiment ID3, 60min TSA and A-485 tx , replicate1. |
| GSM4378106 |
EU Seq of ESC. Experiment ID6, 60min TSA and A-485 tx , replicate1. |
| GSM4378107 |
EU Seq of ESC. Experiment ID3, 60min A-485 tx and co-tx with TSA in the last 30min, replicate1. |
| GSM4378108 |
EU Seq of ESC. Experiment ID6, 60min A-485 tx and co-tx with TSA in the last 30min, replicate1. |
| GSM4378109 |
EU Seq of ESC. Experiment ID3, 90min A-485 tx and co-tx with TSA in the last 60min, replicate1. |
| GSM4378110 |
EU Seq of ESC. Experiment ID6, 90min A-485 tx and co-tx with TSA in the last 60min, replicate1. |
| GSM4378111 |
EU Seq of ESC. Experiment ID3, 150min A-485 tx and co-tx with TSA in the last 120min, replicate1. |
| GSM4378112 |
EU Seq of ESC. Experiment ID6, 150min A-485 tx and co-tx with TSA in the last 120min, replicate1. |
| GSM4378113 |
EU Seq of ESC. Experiment ID2, 30min JQ1 tx, replicate1. |
| GSM4378114 |
EU Seq of ESC. Experiment ID2, 30min JQ1 tx, replicate2. |
| GSM4378115 |
EU Seq of ESC. Experiment ID3, 30min JQ1 tx, replicate1. |
| GSM4378116 |
EU Seq of ESC. Experiment ID2, 60min JQ1 tx, replicate1. |
| GSM4378117 |
EU Seq of ESC. Experiment ID2, 60min JQ1 tx, replicate2. |
| GSM4378118 |
EU Seq of ESC. Experiment ID3, 60min JQ1 tx, replicate1. |
| GSM4378119 |
EU Seq of ESC. Experiment ID2, 120min JQ1 tx, replicate1. |
| GSM4378120 |
EU Seq of ESC. Experiment ID2, 120min JQ1 tx, replicate2. |
| GSM4378121 |
EU Seq of ESC. Experiment ID3, 120min JQ1 tx, replicate1. |
| GSM4378122 |
EU Seq of ESC. Experiment ID4, control, replicate1. |
| GSM4378123 |
EU Seq of ESC. Experiment ID4, control, replicate2. |
| GSM4378124 |
EU Seq of ESC. Experiment ID7, control, replicate1. |
| GSM4378125 |
EU Seq of ESC. Experiment ID7, control, replicate2. |
| GSM4378126 |
EU Seq of ESC. Experiment ID4, 60min TSA tx, replicate1. |
| GSM4378127 |
EU Seq of ESC. Experiment ID4, 60min TSA tx, replicate2. |
| GSM4378128 |
EU Seq of ESC. Experiment ID7, 60min TSA tx, replicate1. |
| GSM4378129 |
EU Seq of ESC. Experiment ID7, 60min TSA tx, replicate2. |
| GSM4378130 |
EU Seq of ESC. Experiment ID4, 60min 10uM JQ1 tx, replicate1. |
| GSM4378131 |
EU Seq of ESC. Experiment ID4, 60min 10uM JQ1 tx, replicate2. |
| GSM4378132 |
EU Seq of ESC. Experiment ID7, 60min 10uM JQ1 tx, replicate1. |
| GSM4378133 |
EU Seq of ESC. Experiment ID7, 60min 10uM JQ1 tx, replicate2. |
| GSM4378134 |
EU Seq of ESC. Experiment ID4, 60min 0.5uM JQ1 tx, replicate1. |
| GSM4378135 |
EU Seq of ESC. Experiment ID4, 60min 0.5uM JQ1 tx, replicate2. |
| GSM4378136 |
EU Seq of ESC. Experiment ID7, 60min 0.5uM JQ1 tx, replicate1. |
| GSM4378137 |
EU Seq of ESC. Experiment ID7, 60min 0.5uM JQ1 tx, replicate2. |
| GSM4378138 |
EU Seq of ESC. Experiment ID4, 120min 0.5uM JQ1 tx, replicate1. |
| GSM4378139 |
EU Seq of ESC. Experiment ID4, 120min 0.5uM JQ1 tx, replicate2. |
| GSM4378140 |
EU Seq of ESC. Experiment ID7, 120min 0.5uM JQ1 tx, replicate1. |
| GSM4378141 |
EU Seq of ESC. Experiment ID7, 120min 0.5uM JQ1 tx, replicate2. |
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| This SubSeries is part of SuperSeries: |
| GSE146328 |
Enhancers are Activated by p300/CBP Activity-Dependent PIC Assembly, RNAPII Recruitment and Pause Release |
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| Relations |
| BioProject |
PRJNA610092 |
| SRA |
SRP251461 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE146326_EUSeq_mESC_A485_ShortTimecourse_0min.n2.smooth.bw |
188.7 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_A485_ShortTimecourse_20min.n2.smooth.bw |
171.3 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_A485_Timecourse_0min.n2.smooth.bw |
225.7 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_A485_Timecourse_120min.n2.smooth.bw |
235.3 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_A485_Timecourse_30min.n2.smooth.bw |
218.0 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_A485_Timecourse_60min.n2.smooth.bw |
226.4 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_JQ1_Timecourse_0min.n2.smooth.bw |
203.4 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_JQ1_Timecourse_120min.n2.smooth.bw |
192.8 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_JQ1_Timecourse_30min.n2.smooth.bw |
211.7 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_JQ1_Timecourse_60min.n2.smooth.bw |
194.4 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_TSA_Recovery_Timecourse_A485_30min_followed_by_A485.TSA_30min.n2.smooth.bw |
161.7 Mb |
(ftp)(http) |
BW |
| GSE146326_EUSeq_mESC_TSA_Recovery_Timecourse_A485_30min_followed_by_A485.TSA_60min.n2.smooth.bw |
160.7 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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