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Series GSE144857 Query DataSets for GSE144857
Status Public on Aug 05, 2022
Title Molecular convergence between Down syndrome and Fragile X syndrome identified using human pluripotent stem cell models
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study was to define molecular overlap between Down syndrome and Fragile X syndrome using human pluripotent stem cells (hPSCs) and in vitro derived glutamatergic neurons.
 
Overall design RNA-seq was performed in FMR1y/+ ad FMR1y/- hPSCs and neurons as well as trisomy 21 and euploid control iPSCs and neurons, each with 5 biological replicates.
 
Contributor(s) Barrett LE, Susco SG, Barrera V
Citation(s) 36070702
Submission date Feb 06, 2020
Last update date Sep 27, 2022
Contact name VICTOR BARRERA BURGOS
Organization name Harvard School of Public Health
Department Biostatistics
Lab Bioinformatics Core
Street address Landmark 401 Park Drive 3 East
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (40)
GSM4299665 RNAseq Euploid_neuron_E04
GSM4299666 RNAseq Euploid_neuron_E06
GSM4299667 RNAseq Euploid_neuron_F01
Relations
BioProject PRJNA605160
SRA SRP247510

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144857_counts_raw-2019-12-06.csv.gz 1.2 Mb (ftp)(http) CSV
GSE144857_counts_tpm-2019-12-06.csv.gz 3.2 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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