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GEO accession:
Series GSE144844
Query DataSets for GSE144844
Status
Public on Sep 10, 2020
Title
Genomic characterization of SMARCA4 mutants in lung cancer
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33144586
Submission date
Feb 06, 2020
Last update date
Nov 16, 2020
Contact name
Robert Piskol
E-mail(s)
piskolr@gene.com
Organization name
Genentech Inc.
Department
Bioinformatics
Street address
1 DNA Way
City
South San Francisco
State/province
CA
ZIP/Postal code
94080
Country
USA
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (77)
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More...
GSM4299077
H1944_LACZ_shNTC_R1 (ATAC-seq)
GSM4299078
H1944_LACZ_shSMARCA2_R1 (ATAC-seq)
GSM4299079
H1944_WT_shNTC_R1 (ATAC-seq)
GSM4299080
H1944_WT_shSMARCA2_R1 (ATAC-seq)
GSM4299081
H1944_K785R_shNTC_R1 (ATAC-seq)
GSM4299082
H1944_K785R_shSMARCA2_R1 (ATAC-seq)
GSM4299083
H1944_E882K_shNTC_R1 (ATAC-seq)
GSM4299084
H1944_E882K_shSMARCA2_R1 (ATAC-seq)
GSM4299085
H1944_T910M_shNTC_R1 (ATAC-seq)
GSM4299086
H1944_T910M_shSMARCA2_R1 (ATAC-seq)
GSM4299087
H1944_R973L_shNTC_R1 (ATAC-seq)
GSM4299088
H1944_R973L_shSMARCA2_R1 (ATAC-seq)
GSM4299089
H1944_R1135W_shNTC_R1 (ATAC-seq)
GSM4299090
H1944_R1135W_shSMARCA2_R1 (ATAC-seq)
GSM4299091
H1944_G1159V_shNTC_R1 (ATAC-seq)
GSM4299092
H1944_G1159V_shSMARCA2_R1 (ATAC-seq)
GSM4299093
H1944_G1162C_shNTC_R1 (ATAC-seq)
GSM4299094
H1944_G1162C_shSMARCA2_R1 (ATAC-seq)
GSM4299095
H1944_A1186T_shNTC_R1 (ATAC-seq)
GSM4299096
H1944_A1186T_shSMARCA2_R1 (ATAC-seq)
GSM4299097
H1944_R1192C_shNTC_R1 (ATAC-seq)
GSM4299098
H1944_R1192C_shSMARCA2_R1 (ATAC-seq)
GSM4299099
H1944_G1232S_shNTC_R1 (ATAC-seq)
GSM4299100
H1944_G1232S_shSMARCA2_R1 (ATAC-seq)
GSM4299101
H1944_LACZ_shNTC_R2 (ATAC-seq)
GSM4299102
H1944_LACZ_shSMARCA2_R2 (ATAC-seq)
GSM4299103
H1944_WT_shNTC_R2 (ATAC-seq)
GSM4299104
H1944_WT_shSMARCA2_R2 (ATAC-seq)
GSM4299105
H1944_K785R_shNTC_R2 (ATAC-seq)
GSM4299106
H1944_K785R_shSMARCA2_R2 (ATAC-seq)
GSM4299107
H1944_E882K_shNTC_R2 (ATAC-seq)
GSM4299108
H1944_E882K_shSMARCA2_R2 (ATAC-seq)
GSM4299109
H1944_T910M_shNTC_R2 (ATAC-seq)
GSM4299110
H1944_T910M_shSMARCA2_R2 (ATAC-seq)
GSM4299111
H1944_R973L_shNTC_R2 (ATAC-seq)
GSM4299112
H1944_R973L_shSMARCA2_R2 (ATAC-seq)
GSM4299113
H1944_R1135W_shNTC_R2 (ATAC-seq)
GSM4299114
H1944_R1135W_shSMARCA2_R2 (ATAC-seq)
GSM4299115
H1944_G1159V_shNTC_R2 (ATAC-seq)
GSM4299116
H1944_G1159V_shSMARCA2_R2 (ATAC-seq)
GSM4299117
H1944_G1162C_shNTC_R2 (ATAC-seq)
GSM4299118
H1944_G1162C_shSMARCA2_R2 (ATAC-seq)
GSM4299119
H1944_A1186T_shNTC_R2 (ATAC-seq)
GSM4299120
H1944_A1186T_shSMARCA2_R2 (ATAC-seq)
GSM4299121
H1944_R1192C_shNTC_R2 (ATAC-seq)
GSM4299122
H1944_R1192C_shSMARCA2_R2 (ATAC-seq)
GSM4299123
H1944_G1232S_shNTC_R2 (ATAC-seq)
GSM4299124
H1944_G1232S_shSMARCA2_R2 (ATAC-seq)
GSM4299143
NCI-H1944_LACZ_shNTC_SAM24357796 (RNA-seq)
GSM4299144
NCI-H1944_LACZ_shNTC_SAM24357797 (RNA-seq)
GSM4299145
NCI-H1944_LACZ_shNTC_SAM24357798 (RNA-seq)
GSM4299146
NCI-H1944_LACZ_shSMARCA2_SAM24357799 (RNA-seq)
GSM4299147
NCI-H1944_LACZ_shSMARCA2_SAM24357800 (RNA-seq)
GSM4299148
NCI-H1944_LACZ_shSMARCA2_SAM24357801 (RNA-seq)
GSM4299149
NCI-H1944_WT_shNTC_SAM24357802 (RNA-seq)
GSM4299150
NCI-H1944_WT_shNTC_SAM24357803 (RNA-seq)
GSM4299151
NCI-H1944_WT_shNTC_SAM24357804 (RNA-seq)
GSM4299152
NCI-H1944_WT_shSMARCA2_SAM24357805 (RNA-seq)
GSM4299153
NCI-H1944_WT_shSMARCA2_SAM24357806 (RNA-seq)
GSM4299154
NCI-H1944_WT_shSMARCA2_SAM24357807 (RNA-seq)
GSM4299155
NCI-H1944_K785R_shNTC_SAM24357808 (RNA-seq)
GSM4299156
NCI-H1944_K785R_shNTC_SAM24357809 (RNA-seq)
GSM4299157
NCI-H1944_K785R_shNTC_SAM24357810 (RNA-seq)
GSM4299158
NCI-H1944_K785R_shSMARCA2_SAM24357811 (RNA-seq)
GSM4299159
NCI-H1944_K785R_shSMARCA2_SAM24357812 (RNA-seq)
GSM4299160
NCI-H1944_K785R_shSMARCA2_SAM24357813 (RNA-seq)
GSM4420258
H1944-LACZ-NoDOX_Input
GSM4420259
H1944-LACZ-NoDOX_SMARCA2_R1
GSM4420260
H1944-LACZ-NoDOX_SMARCA2_R2
GSM4420261
H1944-LACZ-NoDOX_SMARCA4_R1
GSM4420262
H1944-LACZ-NoDOX_SMARCA4_R2
GSM4420263
H1944-SMARCA4-DOX_Input
GSM4420264
H1944-SMARCA4-DOX_SMARCA4_R1
GSM4420265
H1944-SMARCA4-DOX_SMARCA4_R2
GSM4420266
H1944-SMARCA4-NoDOX_Input
GSM4420267
H1944-SMARCA4-NoDOX_SMARCA4_R1
GSM4420268
H1944-SMARCA4-NoDOX_SMARCA4_R2
This SuperSeries is composed of the following SubSeries:
GSE144840
Chromatin accessibility of lung cancer cells reconstituted with SMARCA4 WT or SMARCA4 mutants with and without SMARCA2 depletion
GSE144843
Expression profiling of lung cancer cells reconstituted with SMARCA4 WT and mutant K785R after SMARCA2 knockdown
GSE147201
Genome binding of SMARCA2 and SMARCA4 in lung cancer cells reconstituted with SMARCA4 WT with and without SMARCA2 depletion
Relations
BioProject
PRJNA605122
Download family
Format
SOFT formatted family file(s)
SOFT
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Supplementary file
Size
Download
File type/resource
GSE144844_RAW.tar
29.1 Gb
(http)
(custom)
TAR (of BIGWIG, BW, NARROWPEAK, TSV)
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