NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE144844 Query DataSets for GSE144844
Status Public on Sep 10, 2020
Title Genomic characterization of SMARCA4 mutants in lung cancer
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 33144586
Submission date Feb 06, 2020
Last update date Nov 16, 2020
Contact name Robert Piskol
E-mail(s) piskolr@gene.com
Organization name Genentech Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (77)
GSM4299077 H1944_LACZ_shNTC_R1 (ATAC-seq)
GSM4299078 H1944_LACZ_shSMARCA2_R1 (ATAC-seq)
GSM4299079 H1944_WT_shNTC_R1 (ATAC-seq)
This SuperSeries is composed of the following SubSeries:
GSE144840 Chromatin accessibility of lung cancer cells reconstituted with SMARCA4 WT or SMARCA4 mutants with and without SMARCA2 depletion
GSE144843 Expression profiling of lung cancer cells reconstituted with SMARCA4 WT and mutant K785R after SMARCA2 knockdown
GSE147201 Genome binding of SMARCA2 and SMARCA4 in lung cancer cells reconstituted with SMARCA4 WT with and without SMARCA2 depletion
Relations
BioProject PRJNA605122

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144844_RAW.tar 29.1 Gb (http)(custom) TAR (of BIGWIG, BW, NARROWPEAK, TSV)
SRA Run SelectorHelp

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap