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Series GSE144435 Query DataSets for GSE144435
Status Public on Mar 11, 2020
Title Transcriptional comparison of in vitro generated human dendritic cells and peripheral blood circulating dendritic cells.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Classical dendritic cells (cDCs) are rare sentinel cells specialized in the regulation of adaptive immunity. Modelling cDC development is both crucial to study cDCs and harness their potential in immunotherapy. Here we present a novel in vitro cDC differentiation protocol using cord blood CD34+ hematopoietic stem and progenitor cells (HSPCs) co-cultured with bone marrow-derived murine mesenchymal cell line (MS5) engineered to co-express human FLT3L, SCF and CXCL12 (MS5_FS12).
 
Overall design Blood cDC1 and cDC2 were isolated from healthy donor buffy coats. In vitro generated cDC1, cDC2 CD206- and cDC2 CD206+ cells were collected at day 14. All cell types were analysed in triplicates with up to 100 cells per sample.
 
Contributor(s) Pierre G, Giorgio A, Kristine V
Citation(s) 32345968
Submission date Jan 29, 2020
Last update date May 12, 2020
Contact name Kristine Vaivode
E-mail(s) kristine.vaivode@kcl.ac.uk
Phone 02078486907
Organization name King's College London
Department Centre for Inflammation Biology and Cancer Immunology
Lab Dr Pierre Guermonprez lab
Street address CIBCI, First Floor, New Hunt's House, Great Maze Pond
City London
ZIP/Postal code SE1 1UL
Country United Kingdom
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (15)
GSM4288256 B_DC1_d1
GSM4288257 B_DC1_d2
GSM4288258 B_DC1_d3
Relations
BioProject PRJNA603654
SRA SRP245802

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144435_PG_KCL_RNAseq_FPKM.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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